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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtag

Basic information

species Glycine max
transcript GLYMA04G00640.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g05690.1 (Oryza sativa), 5'ss of exon 2
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgttt--cttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtag
||| || |||||||||||| | || |||||||| || ||||||||||||||||| ||||| || |||||| || | || ||||| ||| | ||||| ||||||      || || || |     || ||||| ||  |||  | |  ||  ||  |  | ||   || ||| |   |  |     || ||||| ||| ||  | ||    ||                    
CCCGTCATTCCACAACTACCGCATTTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCCTGGTACATCGCCGTCGCCTCCCTCATCCACGGACAGgtac-----atatatatct-----tacataat-attcatagcagttttatagttcttgaggaggtatcatgatgtaccaaaaatttaatataa-aatttggtacctcatagt--------------------

upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatc-tatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgt-gtag---------
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || ||||| ||| | || ||||||||| ||  ||   | |    | |     ||     ||  |  || | | |  |  || | |||||    | |    |   ||   | ||| | | |  |   |  |||    || |  | || || | |||          
CCCGTCGTTCCACAACTACCGGATCTGGTCATTCCTCGGCCTCGTCATGACCACCTACACGGCCTGGTACCTCGCCGTCGCCTCCCTCATCCATGGCCAGgtagta-caacacaaaagcaccatctgttagc---atgcagcatgcttgcatttctcgtctgaatagcgaggcgcatgcctgaacattattacattgcgttgtgctgaaaaaac-acttgtgttttttgtatgaatatcag

upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G045057_T02 (Zea mays), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattatt--cctact-gtgatctatgaatcattatgtttcttagtggctactataataatatgcgatct-tgatgttactatatatgattgtgtag
||| ||||||||||||||| | ||||||||||| || ||||||||||||||||| ||||| || |||||||||||  ||||| |  ||   ||||| ||||||   ||    |     ||  |    ||   |   |  |||  |  ||| || | | | | |  | ||    || | |  |    ||| | || | ||   |||    ||   || ||||             
CCCCTCCTTCCACAACTACCGGATCTGGTCCTTCCTCGGCCTCCTCATGACCACCTACACCGCATGGTACCTCACCATTGCCGCCATCGCACACGGTCAGgtatatatgcgctgagcgtgtgatatgatgcactagtcgattgatcgcctgcttgcgctatgtccagcagatcgtgtatatggccgtacca-aacattaattgatggacgacaatattatag------------

upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G149481_T02 (Zea mays), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtag
||| || |||||||||||| | |||||||| || || |||||| |||||||||| ||||| || ||||||||| | || || || ||| | || |||||||||   | |   |||  ||| |     ||||| ||  ||  | |     |||||  || ||        |||   | |  |||    |  ||  | || | |  || || | |||  | |    |     
CCCGTCGTTCCACAACTACCGGATCTGGTCGTTCCTGGGCCTCGTCATGACCACCTACACGGCGTGGTACCTCGCCGTCGCGTCCCTCATCCATGGCCAGgtacgca-agcgtagcgttgaagc---ataat-atgcattctgtgggc-ctgtggcctgtggcc-----tgtgggtgaccggccgagacgatg-tgtgtgcttctgctgct-ctacttgttgcag-----

upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G21050.1 (Arabidopsis thaliana), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatttgcaaataaataatcatatatattattcctactgtgatctatgaatcattatgtttcttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtag
 |||||||||||||||||||| |||||||| |||||||| ||| | |||||||||||||||||||||||||||||  |||||||| |||| || || |||||||   || ||     ||  |  ||| || |   |   |   ||     |  ||        | ||  |||  ||||  ||     | ||  ||   | |  |                          
TCCTTCCTTCCACAACTACAGGATCTGGTCTTTTCTTGGACTCTTGATGACCACTTACACTGCTTGGTACCTCACCATTGCCTCTATCCTCCATGGACAGgtaac--tagttctttctttaatctaattagtttcaacga--gttaaagattagaatagctggtgatgttgtggcttaaggggactcaaaaacatcaacaaagt--------------------------

upper sequence: GLYMA04G00640.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv03s0038g02140.t01 (Vitis vinifera), 5'ss of exon 4
CCCTTCCTTCCACAACTACAGAATCTGGTCCTTTCTTGGCCTCCTCATGACCACTTACACTGCTTGGTACCTCACAGTTGCCTCTCTCCTTCACGGCCAGgtaataataatttagatt-tgcaaataaataatcata-tatattattcctactgtgatctatgaatcattatgttt-cttagtggctactataataatatgcgatcttgatgttactatatatgattgtgtag
 ||||| ||||||||||||||||||||||||||  | ||| |  ||||||||||||||||||| ||||||||||| ||||| || ||||| || ||||||||| ||   || ||  |  | |||  |||||  || |  |||| ||    |   |  |  |||| |   | | |||  ||| |   |  | |  ||||  ||                               
TCCTTCATTCCACAACTACAGAATCTGGTCCTTCTTGGGCTTGATCATGACCACTTACACTGCCTGGTACCTCACTGTTGCATCCCTCCTCCATGGCCAGgtactatacatatatctcattcaaccaaatatccaaaacatatgatattaaaattagtaaatgattttatttatttatttatttatttatttgttaatgggcag-----------------------------