Sequence
atgc intronic sequence ATGC exonic sequenceATGCTAACGAAGGCTTTCACTGCTATTCTCGCTGTAATCCTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGGgtaagaaattctccaattgctcttgttccatcatgctacataaacatgttccttttcttttccctcttgcttctttatctatacaagtatactatggtct...
Basic information
species | Glycine max |
transcript | GLYMA04G00250.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G00250.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g51100.2 (Oryza sativa), 5'ss of exon 7
ATGCTAACGAAGGCTTTCACTGCTATTCTCGCTGTAATCCTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGGgtaagaa--attctccaattgctcttgttccatcatgctacataaacatgttccttttcttttccctcttgcttctttatctatacaagtatactatggtct
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GTGATAATAAAGACAATTTGTGCTATTCTTGCGGTGATTCTTGAATCCTTTGGAGTGTACTGTGAAGGAGAGTTTAAGTGGAACTGTGGgtaagaggcatatacacatgaagggcgtttatttaattcatttaaacattttgttcaacattccttgcataaactttttctcatttatgc-tgcattgctt-
upper sequence: GLYMA04G00250.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G088737_T01 (Zea mays), 5'ss of exon 6
ATGCTAACGAAGGCTTTCACTGCTATTCTCGCTGTAATCCTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGGgtaagaaattctccaattgctcttgttc-catcatgctacataaacatgttccttttcttttccctcttgcttctttatctatacaagtatactatggtct
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ATGATAATAAAATCAATATGTGCTATTCTTGCGGTGATTCTTGAATCCTTTGGAGTGTACTGTGAAGGAGAGTTTAAGTTGAACTGTGGgtaagagacatacacattgatttcattcactccataatccttgcacgaatttgtctcatctgtgctacattgttcccatcc-tactatctttttttggaag
upper sequence: GLYMA04G00250.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G373717_T01 (Zea mays), 5'ss of exon 5
ATGCTAACGAAGGCTTTCACTGCTATTCTCGCTGTAATCCTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGGgtaagaaattctccaattgctcttgttccatcatgctacataaacatgttccttttcttttccctcttgcttctttatctatac-aagtatactatggtct-----------------------------------
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ATGATAATAAAATCAATATGTGCTATTCTTGCGGTGATTCTTGAATCCTTTGGAGTGTATTGTGAAGGAGAGTTTAAGTTGAACTGTGGgtaagagg-----catatactttttttttgttttgc-acatgtgctagctc-tggtcaacttgctcatgcatttgatggcataggaaatgaacaatcattgccttgccattactgaactatttacttatctaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21887467|gb|BQ740680.1|BQ740680EST: CTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGG GTATCCTTATATGGCAGTGGTTCTAAATTTCAGTCAGTCATGGGCTTTGTA
genomic: CTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGGgtaagaaatt ... acatttgtagGTATCCTTATATGGCAGTGGTTCTAAATTTCAGTCAGTCATGGGCTTTGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGCTAACGAAGGCTTTCACTGCTATTCTCGCTGTAATCCTTGAAGCCTTTGGAGTCTACTGTGAAGGAGAATTTAAAGTAGGATGTGGgtaagaaattctccaattgctcttgttccatcatgctacataaacatgttccttttcttttccctcttgcttctttatctatacaagtatactatggtct
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttccctc