1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCGATCCAAGTAGTCAACGAGTTCAGTCTCTCTCAAATTTGGATTCTTTCTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAGgtattctatctaaattctactctctctctcttcaaagtttcataaataacgttttcataaaagttaattgtttaatcatttgggcagataagatatctca...
species | Glycine max |
transcript | GLYMA03G41280.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGAAGCTGGATGGCAG GTCAGTCCGGAGCTTTATGGTGACAGCAGGCCCAGATTATTCACTTACTGGEST: gi|31561959|gb|CD487797.1|CD487797
genomic: TTGAAGCTGGATGGCAGgtattctatc ... tactagtcagGTCAGTCCGGAGCTTTATGGTGACAGCAGGCCCAGATTATTCACTTACTGG
EST: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAG TEST: gi|31561959|gb|CD487797.1|CD487797
genomic: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAGgtattctatc ... tactagtcag-
EST: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAG TEST: gi|31561959|gb|CD487797.1|CD487797
genomic: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAGgtattctatc ... tactagtcag-
EST: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAG TEST: gi|31561959|gb|CD487797.1|CD487797
genomic: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAGgtattctatc ... tactagtcag-
EST: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAG T
genomic: CTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAGgtattctatc ... tactagtcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGATCCAAGTAGTCAACGAGTTCAGTCTCTCTCAAATTTGGATTCTTTCTGGCTCCTTTGATGGCACAGATCTCAACAGCATTGAAGCTGGATGGCAGgtattctatctaaattctactctctctctcttcaaagtttcataaataacgttttcataaaagttaattgtttaatcatttgggcagataagatatctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc