1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGATGCGGACTGGGGCTCAGAACAGGGGTTAAAGGACGAGGAGGCACTATGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGgtaaccatataccaaaaattatactacctctggtcccatatataagaaacaaaaggcaacattttcttgatcctaattataaaaatcatataactacttt...
species | Glycine max |
transcript | GLYMA03G41020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAG ATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGAEST: gi|193508516|gb|FK465379.1|FK465379
genomic: TGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGgtaaccatat ... gttattgcagATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGA
EST: AAGGTTCATCAATCATAG ATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGAEST: gi|193640173|gb|FK589296.1|FK589296
genomic: AAGGTTCATCAATCATAGgtaaccatat ... gttattgcagATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGA
EST: TGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAG ATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAAEST: gi|298176786|gb|HO023259.1|HO023259
genomic: TGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGgtaaccatat ... gttattgcagATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAA
EST: TGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAG ATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGAEST: gi|193464117|gb|FK426123.1|FK426123
genomic: TGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGgtaaccatat ... gttattgcagATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGA
EST: AGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAG ATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGA
genomic: AGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGgtaaccatat ... gttattgcagATGCTATGATGCAAATCTCATAGACATTCCTGTCGAAATAGAGAGTCCTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGCGGACTGGGGCTCAGAACAGGGGTTAAAGGACGAGGAGGCACTATGTTTAGATGCAACAAAGAATGGAAATGTCGGAAGGTTCATCAATCATAGgtaaccatataccaaaaattatactacctctggtcccatatataagaaacaaaaggcaacattttcttgatcctaattataaaaatcatataactacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaaa