1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGGTCGTGTTGTGAAGCAAGCTTGAAACGCCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACAgttggggatccttcttctaatacaccttttaactacttgaaatgtattatatacttgttactttttagtacatattctgtcatcatgtgactcatctcactagacactagtcactagtcacatgtcaataagtttgttctattgttttag
species | Glycine max |
transcript | GLYMA03G40880.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACA GTGGGTGAACTTAAGAAACTTGTGGAAEST: gi|298181734|gb|HO025909.1|HO025909
genomic: ATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACAgttggggatc ... attgttttagGTGGGTGAACTTAAGAAACTTGTGGAA
EST: ATCTCAATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACA GTGGGTGAACTTAAGAAACTTGTGGAAGAGGGTEST: gi|19935403|gb|BQ080427.1|BQ080427
genomic: ATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACAgttggggatc ... attgttttagGTGGGTGAACTTAAGAAACTTGTGGAAGAGGGT
EST: ATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACA GTGGGTGAACTTAAGAAACTTGTGGAAGAGGGTAAAGTGAAGTATATAGGGEST: gi|15203192|gb|BI425960.1|BI425960
genomic: ATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACAgttggggatc ... attgttttagGTGGGTGAACTTAAGAAACTTGTGGAAGAGGGTAAAGTGAAGTATATAGGG
EST: ATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACA GTGGGTGAACTTAAGAAACTTGTGGAAGAGGGTAAAGTGAAGTATATAGGG
genomic: ATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACAgttggggatc ... attgttttagGTGGGTGAACTTAAGAAACTTGTGGAAGAGGGTAAAGTGAAGTATATAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGTCGTGTTGTGAAGCAAGCTTGAAACGCCTTGATGTTGAATACATTGATCTCTATTATCAGCACAGGATTGACCAAACAGTACCTATAGAGGAAACAgttggggatccttcttctaatacaccttttaactacttgaaatgtattatatacttgttactttttagtacatattctgtcatcatgtgactcatctcactagacactagtcactagtcacatgtcaataagtttgttctattgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA