1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAATTAGGAGGGCACATGCTGTTCATCCCATTACTGCTGTGCAACTGGAGTGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaagagggtgtccataatgtaaaatgttgtttctgtggagaatttgctgatttgtttcctgcttcccagtcataattgagtttataagtttaga...
species | Glycine max |
transcript | GLYMA03G40680.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|192298310|gb|FG992100.1|FG992100
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: AATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|192332295|gb|FK025960.1|FK025960
genomic: AATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|151410675|gb|EV280490.1|EV280490
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|192314627|gb|FK006385.1|FK006385
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG G-AACTTGGA-TTGGA-TAGTACCATACAGCCCC-TTGGC-GTGGEST: gi|14125225|gb|BG789655.1|BG789655
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGG
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTTGATTTTTEST: gi|151411705|gb|EV281516.1|EV281516
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|209699281|gb|BW670243.1|BW670243
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|12773659|gb|BG238586.1|BG238586
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGAT-TTGTTCCACTTTGCAG GGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTTGGC-GTGGATTTEST: gi|151398884|gb|EV268755.1|EV268755
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGG-AACTTGGAATTGGAATAGTACCATACAGCCCCCTT-GGCCGTGGATTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|261497124|gb|GT185192.1|GT185192
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: GTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|5761333|gb|AI966692.1|AI966692
genomic: GTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|42722439|gb|CK768339.1|CK768339
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTTGGCCGTGGATTTTEST: gi|58017212|gb|CX703954.1|CX703954
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTT-GGCCGTGGATTTT
EST: GGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|209701736|gb|BW667401.1|BW667401
genomic: GGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|213603469|gb|DB966620.1|DB966620
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|192314626|gb|FK006384.1|FK006384
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|254315362|gb|GR825171.1|GR825171
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTTEST: gi|7285866|gb|AW598353.1|AW598353
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
EST: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAG GGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
genomic: TGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaag ... aacacttcagGGAACTTGGAATTGGAATAGTACCATACAGCCCCCTTGGCCGTGGATTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATTAGGAGGGCACATGCTGTTCATCCCATTACTGCTGTGCAACTGGAGTGGTCCCTTTGGACTCGTGAAATTGAGCAAGATATTGTTCCACTTTGCAGgtacataaagagggtgtccataatgtaaaatgttgtttctgtggagaatttgctgatttgtttcctgcttcccagtcataattgagtttataagtttaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA