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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAGGCAAAAACTCCAAGAAACGCAAAGAAAGAGGTGATAAGCCCTTTGACAGCCGAGGTTCAGAAAATTGGCCTAAAAATGTTGGCAAGTTCCTTAGgtaatattgctcaggcattttgttttataaaatataaatcaagcaatgctcactgtcttccgtttcagtgcagtcaacaagaccactttcttaattagct...

Basic information

species Glycine max
transcript GLYMA03G40600.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G04820.1 (Arabidopsis thaliana), 5'ss of exon 4
ACAAAGGCAAAAACTCCAAGAAACGCAAAGAAAGAGGTGATAAGCCCTTTGACAGCCGAGGTTCAGAAAATTGGCCTAAAAATGTTGGCAAGTTCCTTAGgtaatattgctcaggcattttgttttataaaatataaatcaagcaatgctcactgtcttccgtttcagtgcagtcaacaagaccactttcttaattagct---
||| ||| || |  || || ||||| || |||||||| |||||||| ||||| ||| ||||||||||  |||||||  |  ||||||||||||| || |||||||||   | |  ||   | || | | | ||  || | |  | ||         ||      | |||  |  |   || |    |  || || | | |   
ACAGAGGTAATAGATCAAAAAAACGAAAGGAAAGAGGCGATAAGCCTTTTGATAGCAGAGGTTCAGAGCATTGGCCAGAGCATGTTGGCAAGTTTCTCAGgtaatatctttaaatcaacat-ttatttgacattaaagtta--ctatatattggacctagtacattagtctatcctgaaaaatggatacctgaactggatttc

upper sequence: GLYMA03G40600.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g01840.t01 (Vitis vinifera), 5'ss of exon 4
ACAAAGGCAAAAACTCCAAGAAACGCAAAGAAAGAGGTGATAAGCCCTTTGACAGCCGAGGTTCAGAAAATTGGCCTAAAAATGTTGGCAAGTTCCTTAGgtaatattgctcaggcattttgtt-ttataaaatataaatcaagcaatgctcactgtcttccgtttcagtgcagt-caacaagaccactttcttaattagct--
|||| || | |||||||| |||||| ||||| ||| |||||||||||||||| ||  |||||||||| |||||| |  |  ||||||||||||||||||||||| |  | |||  ||| ||| | ||  |   | |  ||   | ||       | ||| || | |    | ||  | |    |  ||   || |   | ||  
ACAATGGTAGAAACTCCAGGAAACGGAAAGATAGACGTGATAAGCCCTTTGATAGTAGAGGTTCAGACAATTGGTCAGAGCATGTTGGCAAGTTCCTTAGgtaaaa--ggtcaatcatgttgctattgcattctttgtatatggaaaaaagttatttctaccatatagaaggagaaccattgaattacaagctaag--aacttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24205460|gb|BU964713.1|BU964713
EST:     GACAGCCGAGGTTCAGAAAATTGGCCTAAAAATGTTGGCAAGTTCCTTAG                         GTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTAT
genomic: GACAGCCGAGGTTCAGAAAATTGGCCTAAAAATGTTGGCAAGTTCCTTAGgtaatattgc ... taatttctagGTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTAT
EST: gi|208046299|gb|GD848687.1|GD848687
EST:     TTGGCCTAAAAATGTTGGCAAGTTCCTTAG                         GTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTAT
genomic: TTGGCCTAAAAATGTTGGCAAGTTCCTTAGgtaatattgc ... taatttctagGTTTCATCTTTACAAGGAGAACAAAGATACCCACGAAGCCTTGGGGGTTAT