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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTTCAGgttaatgtcgtttattttttgaacttttataattgtttagagacaactttccatgcactggtctgactactgttttttttcatttcag

Basic information

species Glycine max
transcript GLYMA03G40260.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40260.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00750.t01 (Vitis vinifera), 5'ss of exon 5
GCTGTATCGTGTCACGGTTGTCTTCTACCATGCATTTTATCTTCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTTCAGgttaatgt-cgtttattttttg-aacttttataattgtttagagacaactttccatgcactggtctgactactgttttttttcatttcag--------------------------------------------
| | ||| || | ||  |  | ||||||||||| |||||||||||  || | ||||  ||||| |||||||||||||| ||||| |  |   ||  ||   ||| || ||      || |||      ||  |    ||| |   ||    || |  | | ||| ||    |                                            
GTTATATGGTCTTACAATGATTTTCTACCATGCCTTTTATCTTCCCCTTCTATATATTACATTTCTAGCAGACTTTTTCCAGgtcatcggatgtccatcccttgcaagttcctctgttatttctttgaaatctgttttgccccattccatgtaatactctattttatgattgattagattcgctataggttatgactgggtgtgctgtgatgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664128|gb|BI701499.1|BI701499
EST:     CATTTTATCTTCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTTCAG                         GAGGAAAATTTCCATTTGGAAAATGTGTATTATTCCGAGATGAAAGATGCA
genomic: CATTTTATCTTCCTTTTTTGTATACAACATTCCTAGCAGACTTTTTTCAGgttaatgtcg ... ttcatttcagGAGGAAAATTTCCATTTGGAAAATGTGTATTATTCCGAGATGAAAGATGCA