Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACGgtttgtaaaccataataactctgccctctaaaattttatgcttaactgaagcaagagttctttctgcattgtttgctcaataaggatataacaatgatac...

Basic information

species Glycine max
transcript GLYMA03G40220.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 2
ATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACGgtttgtaaaccataataactctgccctctaaaattttatgcttaactgaagcaagagttctttctgcattgtttgctcaataaggatataacaat-gatac
|||||| ||||||||||||||||||||||||   |   | ||    | |||   |  ||        ||  |  |    | | | ||    | |||  |  |       ||       ||  |      | | | ||| ||  | |||  
ATTTCACGTGTATGATGTTGATACAAAATATTTCAATTTACCTGTGAAGgtaatttgacatctgcttcttagttcctctataatataaatctgacttcattatatagatttgacat-ctgcctatcactttaagttatgacctttgatta

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 2
ATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACGgtt-tgtaaaccataataactctgccctctaaaattttatgcttaactgaagcaagagttctttctgcattgtttgctcaataaggatataacaatgatac
||||||||||||||| ||||||||||||||| | |   | ||    | |||  | | ||   || |   |    |||||| ||| |||  || |  | ||  ||  || ||||        |||| ||||||         |||| ||  
ATTTCATGTGTATGACGTTGATACAAAATATTACAATTTACCTGTGAAGgtaatttgaaatctacttcttagttcctctataatattaatctgacttcaataaactgtacttttgatgggatttgttcaatatctgccagtcaataatt-

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 4
ATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACGgtttgtaaaccataataactctgc-cctctaaaattttatgcttaactgaagcaagagttctttctgcattgtttgctcaataaggatataacaatgatac
||||||||||||||||||||||||||||||| | |   | ||    | |||   |  ||        ||  |  |||||| ||| | |  || |  | ||  ||     ||||        || | ||||||    | |  |||| ||  
ATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAGgtaatttgacatctgcttcttagttcctctataatataaatctgacttcaataaactacacttttgatgggattggttcaatatctgtctgtcaataatt-

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 4
ATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACGgtttgtaaaccataataactctgc-cctctaaaattttatgcttaactgaagcaagagttctttctgcattgtttgctcaataaggatataacaatgatac
||||||||||||||||||||||||||||||| | |   | ||    | |||   |  ||    |   ||  |  |||||| ||| |||  || |  | ||  ||  || ||||        |||| ||||||         |||| ||  
ATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAGgtaatttgacatctacttcttagttcctctataatattaatctgacttcaataaactgtacttttgatgggatttgttcaatatctgccagtcaataatt-

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCATGTGTATGATGTTGATACAAAATATCATAGCGTTCCCACCACGgtttgtaaaccataataactctgc-cctctaaaattttatgcttaactgaagcaagagttctttctgcattgtttgctcaataaggatataacaatgatac
||||||||||||||||||||||||||||||| | |   | ||    | |||   |  ||        ||  |  |||||| ||| |||  || |  | ||  ||  || ||||        |||| ||||||      |  |||| ||  
ATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAGgtaatttgacatctgcttcttagttcctctataatattaatctgacttcaataaactgtacttttgatgggatttgttcaatatctgcctgtcaataatt-