Sequence
atgc intronic sequence ATGC exonic sequenceATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACGgtttgtaaaccataataactctgccctctaaaagaaccctgcattgttttctcagtaaggattttacagtgatacttttcgattgagttaaagcagtgcc...
Basic information
species | Glycine max |
transcript | GLYMA03G40210.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 4
ATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACGgtttgtaaaccataataactctgccctctaaaagaaccctgcattgttttctcagtaaggattttacagtgatacttttcgattgagttaaagcagtgcc-
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ATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAGgtaatttgacatctgcttcttagttcctctataatataaatctgacttcaataaactacacttttgatgggat-tggttcaatatctgtctgtcaataatt
upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 4
ATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACGgtttgtaaaccataataactctgccctctaaaagaaccctgcattgttttctcagtaaggattttacagtgatacttttcgattgagttaaagcagtgcc-
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ATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAGgtaatttgacatctacttcttagttcctctataatattaatctgacttcaataaactgtacttttgatgggat-ttgttcaatatctgccagtcaataatt
upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACGgtttgtaaaccataataactctgccctctaaaagaaccctgcattgttttctcagtaaggattttacagtgatacttttcgattgagttaaagcagtgcc-
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ATTTCATGTGTATGATGTTGATACAAAATATTACAATTTACCTGTGAAGgtaatttgacatctgcttcttagttcctctataatattaatctgacttcaataaactgtacttttgatgggat-ttgttcaatatctgcctgtcaataattMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192315059|gb|FK010429.1|FK010429EST: ATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACG ACGCTAAAACTGGGAGATCAAGAATTCCTTGGAATGACCAGTTGCACTTTA
genomic: ATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACGgtttgtaaac ... gttcctgcagACGCTAAAACTGGGAGATCAAGAATTCCTTGGAATGACCAGTTGCACTTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTTCATGTATATGATGTTGATACAAAATATCACAGCGTTCCCACCACGgtttgtaaaccataataactctgccctctaaaagaaccctgcattgttttctcagtaaggattttacagtgatacttttcgattgagttaaagcagtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaac