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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCTgtaagttttagttactgagccactatactttggtgatttcatatgccaaatcactttcagtctttcactaattcattcaacag

Basic information

species Glycine max
transcript GLYMA03G39760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 5'ss of exon 4
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCTgtaagttttagttactgagccactatactttggtgatttcatatgccaaatcactttcagtctttcactaattcattcaacag-
|||||| || ||||| || ||  | |||||  | || || ||||||||||||||||| ||||| ||||| |||| ||| ||||| || || |||||  ||||||||      |  |||   ||||   || |||    | | |||   | | |   | |    || |  || |  || || |  
TACGGTGAGGGAAGATGAAACTTTGAATATCTTGCTTGAATTTGTTCCTGGTGGATCTATATCTTCACTCTTGGAGAAATTTGGAGCCTTTCCTGAATCTgtaagtcgct-ctgttgaaaaacta---ttgggtttcctgaaatgttga-tgatggtaacatcttta--aactgtttgaaaaag

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 4
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCTgtaagttttagttactgagccactatactttggtgatttcatatgc-caaatcactttcagtctttcactaattcattcaacag
||| || || ||||| || ||||| ||||| || || ||||||||||| |||||||| |||||||| || |||| ||| |||||  | || |||||  | ||||||  |  ||   ||     | |  ||   |   ||   |||     ||  |||      |   |   ||| | | |    
TACAGTGAGGGAAGATGATACCCTGAATATCCTTCTCGAGTTTGTTCCCGGTGGATCGATATCATCGCTCTTGGAGAAATTTGGACCTTTTCCTGAATCAgtaagtcatgcttg--gatttttttttgttcaatctcttacaatgtgtgcattgcttaagtggtgagaacgattgaattag---

upper sequence: GLYMA03G39760.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 4
TACGGTCAGAGAAGAGGACACCCTAAATATTCTCCTGGAGTTTGTTCCTGGTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCTgtaagttttagttactgagccactatactttggtgatttcatatgccaaatcactttcagtct--ttcactaattcattcaacag
||  ||||| || ||||| ||| | |||||| |  |||| |||||||||||||||||||| |||||||| |||||||| |||||  | |||||||||||||| ||   |  | ||  |    ||  |  |||   ||||    ||  |  | | |   | | |  |  |||| ||   | | |||
TATAGTCAGGGAGGAGGAGACCTTGAATATTTTGTTGGAATTTGTTCCTGGTGGATCCATCTCATCACTTTTGGGGAAATTTGGATCTTTCCCTGAGGCTgtgag---tgatcaccaat---cttgatgttgcacattttggttgttattttaatgctaatatcatctactactttgctaagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|24136839|gb|BU927349.1|BU927349
EST:     GTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCT                         GTAATAAGAACCTACACAAAGCAGCTACTACTTGGACTCGAGTACTTGCAC
genomic: GTGGATCCATATCATCACTATTGGGGAAGTTTGGGGCATTCCCTGAGGCTgtaagtttta ... cattcaacagGTAATAAGAACCTACACAAAGCAGCTACTACTTGGACTCGAGTACTTGCAC