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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatcttgtacttcctatttgtatgatgtcaatatgtgtgttttaaaacaagtttgtgactttagtatattttgaattatttattttaatttagtg...

Basic information

species Glycine max
transcript GLYMA03G39130.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040454|gb|BM308748.1|BM308748
EST:     AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: gi|192297309|gb|FG992403.1|FG992403
EST:     AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: gi|193704960|gb|FK643960.1|FK643960
EST:     AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: gi|207682534|gb|GD664863.1|GD664863
EST:     AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: gi|298196930|gb|HO041673.1|HO041673
EST:     AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: gi|18041310|gb|BM309604.1|BM309604
EST:     AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: gi|208331009|gb|GE128558.1|GE128558
EST:     AGCCCTTGCGGCGTTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGCCCTTGCGGCG-TTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
EST: gi|4436994|gb|AI522859.1|AI522859
EST:     AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAG                         GTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC
genomic: AGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatct ... gttaatgcagGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGgtgtttatcttgtacttcctatttgtatgatgtcaatatgtgtgttttaaaacaagtttgtgactttagtatattttgaattatttattttaatttagtg

- - - - - - - -  CTGCAG
- - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - TGAAGC