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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattttggcacttcccttatgtctctcagtttcttgtgagtttgcacaggaatttgtatcatgttcagcattcaaagagttgatatagtctccag...

Basic information

species Glycine max
transcript GLYMA03G38810.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588547|gb|AW704270.1|AW704270
EST:     CATTGACTCCGGAGGCATGTGCGCCATAGATTGCTATACTTACTATGGAG                         ATTCNGCGGACAATTGGCGAT
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGAT
EST: gi|213596238|gb|DB960170.1|DB960170
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|151402134|gb|EV271947.1|EV271947
EST:     ATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: ATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|151395479|gb|EV265356.1|EV265356
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGATAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|10846293|gb|BF069216.1|BF069216
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGAC
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGAC
EST: gi|37997687|gb|CF809276.1|CF809276
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|151407958|gb|EV277773.1|EV277773
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
EST: gi|15202616|gb|BI425495.1|BI425495
EST:     CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAG                         ATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA
genomic: CATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattt ... taatttgcagATTAGGGGGACAATTGGCGATTTCATAATGGGTGTGTTTGCTGTCTTCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCAAAACTATATTCCTTCCGACGGAAAAACCATTGACTCCGGAGGCATGTGCGCCATTGATTGCTATACTTCCTTTGGAGgtcagaattttggcacttcccttatgtctctcagtttcttgtgagtttgcacaggaatttgtatcatgttcagcattcaaagagttgatatagtctccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG