1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGCGAAAAAAACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAGgtatgatttataactccttagtagttgctcttagtgcaaaaaccacatagtagtattgaggttgatgtttatattttctcaaacctgcacctcatagcag...
species | Glycine max |
transcript | GLYMA03G38720.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: NNCTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAG GTGTTAGCTGAACGTGAGCAAAAA-TTCAAACTGAAGTGCAAGAAATTCGAEST: gi|18039028|gb|BM307322.1|BM307322
genomic: AACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAGgtatgattta ... gaaaattcagGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATCCGA
EST: NNCTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAG GTGTTAGCTGAACGTGAGCAAAATATTCAAACTGAAGTGCAAGAAATCCGAEST: gi|192318675|gb|FK007971.1|FK007971
genomic: AACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAGgtatgattta ... gaaaattcagGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATCCGA
EST: NNCTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAG GTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATTCGAEST: gi|151400337|gb|EV270151.1|EV270151
genomic: AACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAGgtatgattta ... gaaaattcagGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATCCGA
EST: NNCTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAG GTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATCCGAEST: gi|298183336|gb|HO028549.1|HO028549
genomic: AACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAGgtatgattta ... gaaaattcagGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATCCGA
EST: GATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAG GTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATCCGA
genomic: GATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAGgtatgattta ... gaaaattcagGTGTTAGCTGAACGTGAGCAAAAAATTCAAACTGAAGTGCAAGAAATCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGAAGAAGATGATTTCTTTACTGCAGAAGAAAATATCCAGCGAAAAAAACTTGATGTTGAGTTGGAGGAGACAGAGGAACATGTGAAGAAACGGGAGgtatgatttataactccttagtagttgctcttagtgcaaaaaccacatagtagtattgaggttgatgtttatattttctcaaacctgcacctcatagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA