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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACACCTGCTATATCTCACCCAAAGACGTTGAAATTGCCAAAGAATTTTGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccacttgctctttctcctttatttatttatgttctaattaataattgcgtttggaaggaggcactgactcttgtttttattgttgacgatgacatggattgccaaaccaatttcctcattaaag

Basic information

species Glycine max
transcript GLYMA03G38520.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323979|gb|FK015700.1|FK015700
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|192329589|gb|FK021903.1|FK021903
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|151398613|gb|EV268484.1|EV268484
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|19346536|gb|BM891416.1|BM891416
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|120532302|gb|EH260435.1|EH260435
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|6134067|gb|AW132396.1|AW132396
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|18713013|gb|BM522699.1|BM522699
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|192308925|gb|FK002149.1|FK002149
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|151411964|gb|EV281775.1|EV281775
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|6666111|gb|AW277570.1|AW277570
EST:     GATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: GATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|207761165|gb|GD733298.1|GD733298
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|10238899|gb|BE807795.1|BE807795
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG
EST: gi|9986530|gb|BE660638.1|BE660638
EST:     TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAG                         ATCAG
genomic: TGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccactt ... ctcattaaagATCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTACACCTGCTATATCTCACCCAAAGACGTTGAAATTGCCAAAGAATTTTGATGCGAGGACAGCTTGGTCGCAGTGTAGCACTATTGGAAGAATTCTAGgtcaccacttgctctttctcctttatttatttatgttctaattaataattgcgtttggaaggaggcactgactcttgtttttattgttgacgatgacatggattgccaaaccaatttcctcattaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA