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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTATGGAGAGTCCATGGGAGGAGCAGTGAGCCTTCTTTTACATAAAAAGGACCCTTCATTCTGGGACGGTGCAGTTCTCGTCGCACCCATGTGTAAGgtatgaactaaaaataataataaaatttttaaacaatatttttagtctaggaaaataaatcatactaatggaataaaaataatttgagtaactctattaattccattaattgaatagttactttttcctacgtaaaaattaaacatggcttattcaaatgttgaaacaataagccag

Basic information

species Glycine max
transcript GLYMA03G37290.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37290.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00510.t01 (Vitis vinifera), 5'ss of exon 5
CTTGTATGGAGAGTCCATGGGAGGAGCAGTGAGCCTTCTTTTACATAAAAAGGACCCTTCATTCTGGGACGGTGCAGTTCTCGTCGCACCCATGTGTAAGgtatgaactaaaaataataataaaatttttaaacaatatttttagtctaggaaa-ataaatcatactaatggaataaaaataatttgagtaactctattaattccattaattgaatagttactttttcctacgtaaaaattaaacatggcttattcaaatgttgaaacaataagccag
||||||||||||||||||||| |||||||||  ||| ||  | ||||||||||||||    |||||| | ||||||||||| || ||||||||||||||||||  ||   || || ||  |   ||       |||  |    |   |       ||   |   | |  ||||| | |  |  |||    | || |  ||   | |  |||||||    |   | ||||||  |||    | || ||||                             
CTTGTATGGAGAGTCCATGGGTGGAGCAGTGGCCCTACTACTTCATAAAAAGGACCCCAATTTCTGGAATGGTGCAGTTCTGGTTGCACCCATGTGTAAGgta--aatgcaagatgattgtgtgatcaactcccaaattccacaacatgctttctattggttggaatt-tggaaaacatcttttttttccagctttgcta--ccaagaaattgaacc-ctgggtattcctaattaatgtatgaaaatggtcag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17519393|gb|BM188435.1|BM188435
EST:     AGGACCCTTCATTCTGGGACGGTGCAGTTCTCGTCGCACCCATGTGTAAG                         ATATCAGAGAAGGTGAAGCCACACCCGGTGGTGGTCAACATATTAACTAAA
genomic: AGGACCCTTCATTCTGGGACGGTGCAGTTCTCGTCGCACCCATGTGTAAGgtatgaacta ... aataagccagATATCAGAGAAGGTGAAGCCACACCCGGTGGTGGTCAACATATTAACTAAA