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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattgtgtgtggtgtgctggtgacattttctttttttatttgttaattttaaaactggtaaatttgttgagaagaaagggagccttgccacagta...

Basic information

species Glycine max
transcript GLYMA03G37170.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 4
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattgt----gtgtggtgtgctggtgac-attttctttt--tttatttgtta-attttaaaactggtaaatttgttgagaagaaagggagccttgccacagta
|| || ||||  |||||||||||||| ||||| ||||| || || || || |||||||| ||||| || ||||||||||| || ||| |     |||       || | || || | ||| |  |||  | |||  || || | ||  |||  ||          | |   ||||||         
GATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggatttttaacatgttaaaccttgtttactatgtgcttgtggtttgctggttgtatgtttagacatgtatgttctccatctgcataatcagccttt--------

upper sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 4
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 5'ss of exon 5
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattgtgtgtggtgtgctggtgacattttctttttttatttgttaattttaaaactggtaaatttgttgagaagaaagggagccttgccacagta----
|||||||||||||||||||||||||| ||||| || || || || || |||||||||||||||||||| || ||||||||   | || | |||| ||||   ||     | ||||  || || |   | ||||     || |    |   |  | |   | |  || | |||| |  |    
GACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGgtaatttttttttgtg-tgtgtgtgtatatatctcttgcttgatct---agttttttctttgttcccctctctctggaatgatgatgcttagccaaatcagata

upper sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattgtgtgtggtgtgctggtgacattttctttttttatttgttaattttaaaactg-gtaaatttgttgagaagaaagggagccttgccacagta
|| |||||||| |||||||| ||||| ||||||||||| || || |||||||| ||||| ||  |||| ||||| ||||| | | | || | |  |       | |  ||     | | |   | |||  || | |  |  |    |||||| | | |  |     |    || ||   
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgatatctaagtttaaagctatattgctattatattcatatttatgcttctttgtt-ataggctatatttctaaaccccaagt

upper sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 6
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattgtgtgtggtgtgctggtgacattttctttttttatttgttaattttaaaactggtaaatttgttgagaagaaagggagccttgccacagta-
|| |||||||| |||||||| |||||||| |||||||| || || |||||||| || || |||||||| ||||||||||| ||| |    | |      |  ||   |  |   | | | |  | |  | |  |    || ||  ||  |||   ||           | | |   |  
GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAGgtatgtctgaaatcttcctcacatgtttaagctaaatctatgacct-tacagtgcattcttgttacgttctttgcttagttgtcttttggtcctattttgt

upper sequence: GLYMA03G37170.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S36_327V6.2 (Physcomitrella patens), 5'ss of exon 3
GACGGAGATAGATTTTGGAGGATGCCTGAATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtatt-gtgtgtggtgtgctgg-tgacattttctttttttatttgttaattttaaaactggtaaatttgttgagaagaaagggagccttgccacagta---------------------------------------------------
|| || ||  | || ||||||||||||||||||||||| ||||| ||||| || || ||  | || || |||||||||||  |||||   |  |    | || | |  |  |||   |  |  | ||  |||    | |||| ||    |  |   | ||||| | ||  ||   | |                                                     
GATGGTGACCGGTTCTGGAGGATGCCTGAATGCTACATTCGAGGAAATACTATAAAATATTTGCGGGTTCCTGATGAGgttagtatttacgattcaacttctagctagcggttttaatcctgttctgacaatcagtatactgttattcatactcttacgaaagcgtgcaatgtgcctgatttgttaatagtttctgaaagccatcatcattgctattgtttcctccttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22541271|gb|BU091114.1|BU091114
EST:     AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAA                         GTTATTGATAAAGTCCAAGAAGAAACCAAGAGCCGTGCAT
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: gi|208176841|gb|GD977690.1|GD977690
EST:     AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG                         GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: gi|4306331|gb|AI443889.1|AI443889
EST:     AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG                         GTTATTGATAAAGTTCAAGAAGAAACCAAAGAGC-GTGCAG
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAA-GAGCCGTGCAG
EST: gi|192311359|gb|FK003802.1|FK003802
EST:     AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG                         GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
EST: gi|192311360|gb|FK003803.1|FK003803
EST:     AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAG                         GTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG
genomic: AATGCTACATACGAGGCAATACAATCAAGTACCTTCGAGTACCTGATGAGgtgtgtattg ... ttatttttagGTTATTGATAAAGTTCAAGAAGAAACCAAGAGCCGTGCAG