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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgttggaaattgttttatgtgtatgacagttctcttaagtttgtacacaacatagagtgatgtctgtttgcatgcag

Basic information

species Glycine max
transcript GLYMA03G36550.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g27230.1 (Oryza sativa), 5'ss of exon 5
GTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgt-tggaaattgtt---ttatgtgtatgacagttctcttaagtttgtacacaacatagagtgatgtctgtttg--catgcag
||||| | ||||     | || | || ||||| ||||| || |||||||||||||||| ||||||||| || ||||||||||||||  ||  | || |   ||  | ||   |   |  |||  ||  || |  | |  ||   |    | |   ||    | |||
GTATATACTGGAGCTCCTCATGCCATCGATGGCTGTGCCACCTTTTTCCGTAGAGACAAATTTTCACACGTTAAAAAATATGAGgtacggccactgctgatttgagagtggtatgctaatctgcaggctgca-gctatctaatatttcttgtacctggttgttcag

upper sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G118467_T03 (Zea mays), 5'ss of exon 5
GTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgttggaaattgttttatgtgtatgacagttctcttaagtttgtacacaacatagagtgatgtctgtttgcatgcag
|| ||   ||||||   ||   | || ||||| ||||| || ||||| ||||||||||  ||||||||||| |||||||| |||||    | ||  ||  || || ||  |||| |     ||||| ||  | |  |   |      || |||  |    
GTGTATTCTGGAAATCCTATGGCCATAGATGGATGTGCTACTTTTTTTCGTAGAGACAAGTTTTCACATGTTAAAAAATACGAGgt--acagttacttc-tgagtttg-tagttttggctggtttgcacctatctaattcttgcacttgcttgtgtag--

upper sequence: GLYMA03G36550.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g07020.t01 (Vitis vinifera), 5'ss of exon 4
GTATACAATGGAAACATTAATACAATTGATGGGTGTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgttggaaattgttt-tat-gtgtatgacagttctcttaagtttgtacacaacatagagt-gatgtctgtttgcatgcag
|| |||| ||| || ||  ||||||||||||| |||||||||||||| || || || |||||||||||||| ||||||||||||||    || ||||| |||  || |   ||||| |||   |||  | |||    || | | ||| | || ||| || |||
GTTTACACTGGTAATATCCATACAATTGATGGTTGTGCAACATTTTTTCGCAGGGATAGATTTTCACATGTCAAAAAATATGAGgtaatgaagtgtttgtattatggactccagttttctgtggttattgcacttgctaaaatagatttatgcttgtatacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7042673|gb|AW472567.1|AW472567
EST:     GTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAG                         GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACC
genomic: GTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgttggaaatt ... ttgcatgcagGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACC
EST: gi|9204144|gb|BE330368.1|BE330368
EST:     GTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAG                         GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACC
genomic: GTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgttggaaatt ... ttgcatgcagGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACC
EST: gi|151401049|gb|EV270863.1|EV270863
EST:     GTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAG                         GTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACC
genomic: GTGCAACATTTTTCCGTAGAGACAGATTTTCACATGTGAAAAAATATGAGgttggaaatt ... ttgcatgcagGTTGAATTTAATAAGGCTGCACAGTCTTTAACAGATGCTGTGATTCCAACC