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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTACTTCACCAGAAGAACAAGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTTAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaacttaatgagaaagttagctataatcctttatgtcatactttcatatcactactgtcagttcttatgtttttgtcattctcatgtgtag

Basic information

species Glycine max
transcript GLYMA03G36050.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G36050.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g05990.1 (Oryza sativa), 5'ss of exon 4
TTTTACTTCACCAGAAGAACAAGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTTAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaacttaatgagaaagttagctataatcctttatgtcatactttcatatcactactgtcagttcttatgtttttgtcattctcat-gtgtag
 |||| ||| ||| |||||||||||||||||||  | || ||||| || |||||| ||||||| ||| ||||||||||||| || || ||||| || |||||||      | |     |    ||||    | |  | |   |   | ||        | | || |    | |   |  ||  ||  || |||
ATTTAGTTCTCCACAAGAACAAGAAGCTTATATGAGGAGTTGGCTGGAAGAAAGGGTTGGTTTCAAGACAGACTTCAAAATATCATTCTATCCTGGAAAGgtaa------gggttctcttttcataacaagtga-ataaccttgcaacattgtgttcattacttgtctaatatcaattgtttgcaaagtatag

upper sequence: GLYMA03G36050.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G175453_T02 (Zea mays), 5'ss of exon 5
TTTTACTTCACCAGAAGAACAAGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTTAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaacttaatgagaaagttagctataatccttta-tgtcatactttcatatcac-tactgtcagttcttatgtttttgtcattctcatgtgtag
||||| |||||||||||| ||||||   |||||  | |  ||||| || |||||  ||||||| ||| ||||||||||||| || |||||||| || |||||||||   |       ||    | ||| ||| |     ||      |  |||| || |  || || ||     |                   
TTTTAGTTCACCAGAAGAGCAAGAAAAATATATGAGGAATTGGCTGGAAGAAAGAGTTGGTTTCAAGACAGACTTCAAAATATCATTTTATCCTGGAAAGgtaactc--ttccttttttcagcacaatgcttgaacactatgtgcatagctcacgtagtcgcaatttttccaactacag---------------

upper sequence: GLYMA03G36050.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G11670.1 (Arabidopsis thaliana), 5'ss of exon 4
TTTTACTTCACCAGAAGAACAAGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTTAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaacttaatga----gaaagttagctataatcctttatgtc-------atactttcatatcactactgtc-agttcttatgtttttgtcattctcatgtgtag
 || |  ||||| |||||||||||   |||||||||||  ||| | ||||||||||||||||| ||||| || || ||||| || ||||| || || ||||||  || || |    | |   ||  | |     | |||| |       ||  |||   || | | || |  |||   |  | |||     |||| ||      
CTTCAGCTCACCTGAAGAACAAGAGAGTTATATACGTAAATGGTTGGAGGAAAGGATTGGTTTCAAGGCTGATTTTAAAATCTCCTTTTACCCAGGAAAGgtatgttgatcattttggattctatttttttatttctatggctgccaatatgtttttcaattatttctatagagtaactgagctttctggtttcttatag----

upper sequence: GLYMA03G36050.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0105g00260.t01 (Vitis vinifera), 5'ss of exon 4
TTTTACTTCACCAGAAGAACAAGAAGCTTATATACGTAGCTGGCTTGAGGAAAGGATTGGTTTTAAGGCAGACTTCAAAATTTCTTTTTATCCCGGGAAGgtaacttaatgagaaagttagctataatcctttatgtcatactttcatatcactactgtcagttcttatgtttttgtcattctcatgtgtag
||||| |||||||||||| || || | ||| || |||| |||||||||||||||| ||||||||||||| || ||||| || || |||||||| || ||||||  |   |||  || |    | |   |  |  ||| |  | ||    ||| ||           | |||| ||||  ||     |     
TTTTAGTTCACCAGAAGAGCAGGAGGTTTACATTCGTAACTGGCTTGAGGAAAGGGTTGGTTTTAAGGCTGATTTCAAGATCTCCTTTTATCCAGGAAAGgtagttatttgatgaactggattcttcactctcttgttaatcattatagtcaata--aatgacatatttgttcttgttgtttcttag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


Nothing found