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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGACTTGGGATAGATTATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacttcattgtttcatttttatatgttattaagtttgcaattgcttacaagcataatgaatatcactaatgagtacaacaacaacaacaacgcct...

Basic information

species Glycine max
transcript GLYMA03G33830.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590650|gb|AW706398.1|AW706398
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
EST: gi|208057882|gb|GD856443.1|GD856443
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAA
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAA
EST: gi|298183270|gb|HO028483.1|HO028483
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTCCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
EST: gi|15286766|gb|BI470657.1|BI470657
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
EST: gi|11274749|gb|BF325084.1|BF325084
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
EST: gi|21256772|gb|BQ453660.1|BQ453660
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
EST: gi|14258605|gb|BG881513.1|BG881513
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGT
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGT
EST: gi|193726138|gb|FK662322.1|FK662322
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
EST: gi|208148764|gb|GD944976.1|GD944976
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
EST: gi|11413960|gb|BF426035.1|BF426035
EST:     ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACT                         GTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG
genomic: ATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggactt ... gttggtgtagGTACGAGATCTTGTTATTTCGCGTGGTCTTAATCTCATCATTGAACCAGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTTTTGAAGTTGATTACTTAAATATTGGTGGAGGACTTGGGATAGATTATTATCATTCTGGTGCCATTCTTCCTACACCTAGAGATCTCATTGACACTgtgaggacttcattgtttcatttttatatgttattaagtttgcaattgcttacaagcataatgaatatcactaatgagtacaacaacaacaacaacgcct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC