1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATGGGAAATTCGATGATGAATACTTCCAACAAACTGAAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaacttttagcagttgcaaccagaaagactgacagtttttgctatcatcttttgcatgatgtgtatatatatatatatgttgaatgttgttctagacatggtttcaaatctaattatatgaaccatctttag
species | Glycine max |
transcript | GLYMA03G33680.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAGAATCAAGTGGATTCANGAAAGAGT-CGAAATGCGTAAAATGAAACAG GATCAAAGGTTTGGATATGATCGEST: gi|7588839|gb|AW704626.1|AW704626
genomic: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaact ... ccatctttagGATCAA-GGTTTGGATATGATCG
EST: AAGAATCAAGTGGATTCAGGANAGAGTACGAAATGCGTAAAATGAAACAG GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATEST: gi|19053265|gb|BM731932.1|BM731932
genomic: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaact ... ccatctttagGATCAAGGTTTGGATATGATCGCAGAAGGATTGGAT
EST: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAG GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGEST: gi|151393190|gb|EV263065.1|EV263065
genomic: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaact ... ccatctttagGATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATG
EST: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAG GATCAAGGTTTGGATATGATCGCAEST: gi|31471750|gb|CD413778.1|CD413778
genomic: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaact ... ccatctttagGATCAAGGTTTGGATATGATCGCA
EST: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAG GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGEST: gi|192294446|gb|FG987375.1|FG987375
genomic: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaact ... ccatctttagGATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATG
EST: AAGAATCAAGTGGATTCAGGAAGGAGTACGAAATGCGTAAAATGAAACAG GATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATGEST: gi|208030044|gb|GD831526.1|GD831526
genomic: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaact ... ccatctttagGATCAAGGTTTGGATATGATCGCAGAAGGATTGGATACTTTGAAAAACATG
EST: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAG GATCAAGGTTTGGATA
genomic: AAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaact ... ccatctttagGATCAAGGTTTGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGAAATTCGATGATGAATACTTCCAACAAACTGAAGAATCAAGTGGATTCAGGAAAGAGTACGAAATGCGTAAAATGAAACAGgcaagtaacttttagcagttgcaaccagaaagactgacagtttttgctatcatcttttgcatgatgtgtatatatatatatatgttgaatgttgttctagacatggtttcaaatctaattatatgaaccatctttag
- - - - - - - - - - - - - - - - - - - - - - AGTGGA