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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGCGTGCGGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAACCACATATGGGGATCCAGACACTGTTCGTAGgtaatggaagtttagttgtttgtcttccttttattattattattttttttgcattggtaggttttgatttgatattccattcactaggatcagctgtttcttgcctgctttctaacataatttcag

Basic information

species Glycine max
transcript GLYMA03G32410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32410.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 4
ACGAGCGTGCGGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAACCACATATGGGGATCCAGACACTGTTCGTAGgtaatggaagtttagttgtttgtcttccttttattattattattttttttgcattggtaggttttgatttgatattccattcactaggatcagctgtttcttgcctgctttctaaca-taatttcag-
| ||  | || || |  || || |||||||||||||| || ||||||||||||||||  ||||| || |  |||||||| |||||||| ||  |  | |||||||| | | |||           | ||| ||||  |||         || |||   |    |||   |||| ||||| | ||   ||  |  || ||      | |  ||||||  |  ||| || 
ATGAAAGAGCAGTGCTGGGAGTGACATATTCAGTGGATATCTGGTTGCATTATTGCACTTTTGCCATCAATACATATGGAGATCCAGAAACGATCAGAAGgtaatgaatgctta-----------ttcttctatttgtatg--------tgtattaacaa--cttgg--tgattttccaattacctagacaaaatggtt-----ttaccatctaaccctttttttaga

upper sequence: GLYMA03G32410.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 4
ACGAGCGTGCGGTTCAAGGGGTTACATATTCAGTGGACATGTGGTTGCATTATTGCATATTTGCTATAACCACATATGGGGATCCAGACACTGTTCGTAGgtaatggaagtttagttgtttgtcttccttttattattattattttttttgcattggtaggttttgatttgatattccattcactaggatcagctgtttcttgcctgctttctaacataatttcag
| || || || |||||||| || || ||||| ||||| || |||||||| |||||||||||||| |||| ||||||||| |||||||| ||  |  | ||||||| |   ||   ||||   |  ||     ||| |  ||||   |     ||    |    ||||  |  | |     |||| || ||| | |  |  ||   ||                   
ATGAACGGGCAGTTCAAGGTGTGACTTATTCTGTGGATATTTGGTTGCACTATTGCATATTTGCCATAAGCACATATGGAGATCCAGATACAATCAGAAGgtaatagcttttcttttgtccattatc-----attgtagttatacataggagatcatgattgcttgagct--tctcgttgtcacgagaatctggtaatctttaattg-------------------