1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGTGACAGTGGGGAAATTTTCAATGGAGAAAATTTTCTAGGGTCCTGCAGCCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaatcacaaatgctgctattagcactgactcgatctttttcttattttcaaaaatgattaaactccattttggtggtaaatgcag
species | Glycine max |
transcript | GLYMA03G31340.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCTAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|207819394|gb|GD791190.1|GD791190
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATEST: gi|193680688|gb|FK621164.1|FK621164
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAAT
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|207787136|gb|GD758717.1|GD758717
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|193484819|gb|FK452071.1|FK452071
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGEST: gi|208129385|gb|GD930981.1|GD930981
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTAGGAAAAATAAGTGTCTGTTTATATAEST: gi|193567918|gb|FK526509.1|FK526509
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACT-GGAAAA-TA-GTGTCTGTTTATATA
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTEST: gi|193639885|gb|FK593994.1|FK593994
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACT
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|193656719|gb|FK603751.1|FK603751
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CAAGAGCTTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATTTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|193405014|gb|FK373385.1|FK373385
genomic: CAAGAGCT-ACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|193530081|gb|FK486140.1|FK486140
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|193530006|gb|FK487437.1|FK487437
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAA-G GTGATCTTCACTEST: gi|207821854|gb|GD794293.1|GD794293
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACT
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAA-TAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|208151452|gb|GD950377.1|GD950377
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: TCAAGAGCTACTTGCTAAGGGCAGTGAATTACTTAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|208328005|gb|GE121197.1|GE121197
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|208266065|gb|GE063574.1|GE063574
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|208220718|gb|GE016748.1|GE016748
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|208136048|gb|GD935857.1|GD935857
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAA-TAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|207776619|gb|GD748681.1|GD748681
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAA-G GTGATCTTCACTGGAAAAT-GTGTCTGTTTANATACATAGAACTGGCCAGGEST: gi|207796418|gb|GD769754.1|GD769754
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCEST: gi|208054217|gb|GD854410.1|GD854410
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCC
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGC-AGGEST: gi|208057371|gb|GD849912.1|GD849912
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAA-TAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|208293996|gb|GE090791.1|GE090791
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|207786914|gb|GD755821.1|GD755821
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGGEST: gi|193390807|gb|FK355971.1|FK355971
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
EST: CCAAGAGCTACTTGCTAAGGGCGGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATAEST: gi|193373899|gb|FK339817.1|FK339817
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATA
EST: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAG GTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
genomic: CCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaa ... gtaaatgcagGTGATCTTCACTGGAAAATAGTGTCTGTTTATATACATAGAACTGGCCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGACAGTGGGGAAATTTTCAATGGAGAAAATTTTCTAGGGTCCTGCAGCCAAGAGCTACTTGCTAAGGGCAGTGAATTACTCAAGCGCACCCGTAAAGgtagtatcaatcacaaatgctgctattagcactgactcgatctttttcttattttcaaaaatgattaaactccattttggtggtaaatgcag
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