Sequence
atgc intronic sequence ATGC exonic sequenceCAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGgtttgtagtcctctacatatgtcataaacattgaagataataaaaattggcattttttgtttgttctgttttatgttttgtaaaattccgcattatttttcttgtatgatcttttctatgtttgtccggctgaattatataaatcttgctgaatagatgtgtctcgtctctttttggtaggacag
Basic information
species | Glycine max |
transcript | GLYMA03G29320.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G29320.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G35910.1 (Arabidopsis thaliana), 5'ss of exon 5
CAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGgtttgtagtcctctacatatgtcataaacattgaagataataaaaattggcattttttgtttgttctgttttatgttttgtaaaattccgcattatttttcttgtatgatcttttctatgtttgtccggctgaattatataaatcttgctgaatagatgtgtctcgtctctttttggtaggacag
||||||| ||| ||||||||||||||||| | ||||| |||||||||| || || |||||| || | || || | | || |||| | |||||||| || | | | | |||||| | | | | | | | || || | | | | | ||| | | ||| | | |
CAGATATTCAGCATGTTGATGCTAGATGGAAGGTTCCCATTGTACTTCCACTTCGAGATTGTGTTCGACTGGAAATAACTAGACTCTGCCTTTTGGATGGgttcgt---ttattggctgcctagtctacattgta--ttgttatagtgaaccttattcttgcat---aatccaactattgagtgacgtcacatattctgggcagggcag----------------------------------------------------------------------------
upper sequence: GLYMA03G29320.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g08560.t01 (Vitis vinifera), 5'ss of exon 4
CAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGgtttgtagtcctctacatatgtcataaacattgaagataataaaaattggcattttttgtttgttctgttttatgttttgtaaaattccgcattatttttcttgtatgatcttttctatgtttgtccggctgaattatataaatcttgctgaatagatgtgtctcgtctctttttggtaggacag
|||||||||| ||||||||||| || ||||| | ||||| || ||||| || ||||| ||| |||| |||||| | |||||||| || | |||||||||||||| | | | | | | | | |||| | || |||||| || || | ||||||||| | | | ||| | |||||| | || | | ||||| || || | | || |||| | || | || | |||| ||| |||
CAGATATACAATATGTTGATGCAAGGTGGGAGATCCCTGTAGTGCTTCCACTTCGTGACTGTCTTGCACAAGAGCTGAACATGCTTTGTCGGCTTGATGGgtttgtcattcattccttgt-ccgt-----ttgatg------------ggttttttttcttgatttagagttatgttttttttttcagtgtaaagggattcgtttatgataaat---gtggtgaagtagtaaaattaaatctat--taccatat-gatggggctgatatcatattggcagggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207768202|gb|GD740838.1|GD740838EST: CTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGG TCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTT
genomic: CTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGgtttgtagtc ... ggtaggacagTCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGgtttgtagtcctctacatatgtcataaacattgaagataataaaaattggcattttttgtttgttctgttttatgttttgtaaaattccgcattatttttcttgtatgatcttttctatgtttgtccggctgaattatataaatcttgctgaatagatgtgtctcgtctctttttggtaggacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA