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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAGgtaagaaagagaactatttctgtactttctttatttatttattttttttacctgtgaacatttttatgaagtgaaattctgattaatatctgaaactggcaaaacag

Basic information

species Glycine max
transcript GLYMA03G28570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G28570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g05390.t01 (Vitis vinifera), 5'ss of exon 4
GAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAGgtaagaaa-gagaactatttctgtactttctttatttatttattttttttacctgtgaacatttttatgaagtgaaattctgattaatatctgaaactggcaaaacag---------------
|||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| | ||||||| |    | ||| |    ||    ||| ||     |  | ||  ||| | ||  ||||   |       || ||  ||||||   |  ||||| || | |||  |               
GAATCTTCATCTTTGAGAAATATACCAGTAGTGATCATGTCATCTGAGAATGTGCCTTCAAGGATCACCAGgtaaaactcaaaaacaagaattgggaattcctt-----tccaattcctttccatggaaacacaatc------tggaagactgattctcaggtgaaattgactaaatgggtgctatcattacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208040705|gb|GD839810.1|GD839810
EST:     ATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAG                         ATGTT-GGAGGAAGGAGCCGAAGAATTTTTCTTGAA
genomic: ATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGGATTAACAGgtaagaaaga ... ggcaaaacagATGTTTGGAGGAAGGAGCCGAAGAATTTTTCTTGAA