1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTGTGAGGTTGGGAAGCGTGTGACTTATAACCAGGCTGTCGGCATATTTGGTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGgtatggtccatttcttccctgcatatagtggttcctgcctttactttttggttattttagttagttggtttccttagtcactatctcttctttgccaatg...
species | Glycine max |
transcript | GLYMA03G25740.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAG GCAGTTCCATCATTTCCTAGTTCGTTTCCTCACCTATTTTCTGGAAANGAGEST: gi|7686161|gb|AW756809.1|AW756809
genomic: GTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGgtatggtcca ... gtttatgcagGCAGTTCCATCATTTCCTAGTTCGTTTCCTCACCTATTTTCTGGAAAAGAG
EST: GTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAG GCAGTTCCATCATTTCCTAGTTCGTTTCCTCACCTATTTTCTGGAAAAGAGEST: gi|20811614|gb|BQ296092.1|BQ296092
genomic: GTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGgtatggtcca ... gtttatgcagGCAGTTCCATCATTTCCTAGTTCGTTTCCTCACCTATTTTCTGGAAAAGAG
EST: GTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAG GCAGTTCCATCATTTCCTAGTTCGTTTCCTCACCTATTTTCTGGAAAAGAGEST: gi|26047670|gb|CA784386.1|CA784386
genomic: GTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGgtatggtcca ... gtttatgcagGCAGTTCCATCATTTCCTAGTTCGTTTCCTCACCTATTTTCTGGAAAAGAG
EST: GGTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAG GCAGTTCCATCATTTCCTAGTTCGTTTCCTCCAC-TATTTTCTGGAAAAGA
genomic: GTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGgtatggtcca ... gtttatgcagGCAGTTCCATCATTTCCTAGTTCGTTTCCTC-ACCTATTTTCTGGAAAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGAGGTTGGGAAGCGTGTGACTTATAACCAGGCTGTCGGCATATTTGGTTTTGTTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGgtatggtccatttcttccctgcatatagtggttcctgcctttactttttggttattttagttagttggtttccttagtcactatctcttctttgccaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcttccc