Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAACAGTTGGTGGAGTTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagacatagataacctttggtattctgggtctttaaactttttctctttagtattttttgtctgcttttgatataatatggtcattttctttcatatttgtttcag

Basic information

species Glycine max
transcript GLYMA03G24900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G24900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0021g00830.t01 (Vitis vinifera), 5'ss of exon 4
AAAACAGTTGGTGGAGTTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtaga---catagataacctttggtattctgggtctttaaactttttctctttagtattttttgtctgcttttgatataatatggtcattttctttcatatttgtttcag---------
||| ||  |||||||||||||||||| ||||| ||||||||||||||||| || ||| |||| || ||||||| |   | ||  |  |||| ||     ||||      |||   || |||||  || || || |  | |  ||      |  ||  |||||  |  ||  ||| ||            
AAATCATCTGGTGGAGTTTTGCTGCCCAAATCTGCTGTTAAATTTGAGCGATACCTTATGGGGGAGgtaagtaaaacacttacgttgccttgggaggcatggg-----gaacagattttcttttataattgttcttcgataatggatgcttgaggatatttttatgaatgcttgcttttttgtcatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845565|gb|BF068659.1|BF068659
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACACAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|192294066|gb|FG986155.1|FG986155
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31476115|gb|CD418143.1|CD418143
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|5606787|gb|AI900885.1|AI900885
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7686270|gb|AW756981.1|AW756981
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7686755|gb|AW757403.1|AW757403
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|17400186|gb|BM176968.1|BM176968
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|10843596|gb|BF066873.1|BF066873
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAT
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|192315853|gb|FK008563.1|FK008563
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTCGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7693394|gb|AW761487.1|AW761487
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31473936|gb|CD415964.1|CD415964
EST:     GAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: GAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7145824|gb|AW507746.1|AW507746
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31460082|gb|CD402110.1|CD402110
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7042477|gb|AW472371.1|AW472371
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|209701011|gb|BW652149.1|BW652149
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|192303389|gb|FG995655.1|FG995655
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|6916165|gb|AW397695.1|AW397695
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7326438|gb|AW620247.1|AW620247
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|151396709|gb|EV266582.1|EV266582
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31561223|gb|CD487061.1|CD487061
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|15199348|gb|BI423786.1|BI423786
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31311182|gb|CD396385.1|CD396385
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|31311105|gb|CD396308.1|CD396308
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|6481892|gb|AW201163.1|AW201163
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|12691412|gb|BG157748.1|BG157748
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|298178828|gb|HO024563.1|HO024563
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGTTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|209701010|gb|BW652148.1|BW652148
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|151399965|gb|EV269836.1|EV269836
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7686677|gb|AW757255.1|AW757255
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|120533326|gb|EH261459.1|EH261459
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|7233244|gb|AW568592.1|AW568592
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|15284812|gb|BI468703.1|BI468703
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|9440031|gb|BE440542.1|BE440542
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|151402094|gb|EV271907.1|EV271907
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|15204003|gb|BI426780.1|BI426780
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|13787378|gb|BG649970.1|BG649970
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAACAAAG
EST: gi|6482982|gb|AW202121.1|AW202121
EST:     TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAA                         ATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAAACAA-G
genomic: TTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagac ... tttgtttcagATCCTAACTGTTGGTGCTGAGGCTGGAGAACTAAAGGCTGGAA-CAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAAACAGTTGGTGGAGTTTTGCTGCCTAAATCAGCTGTTAAATTTGAGCGCTATCTTGTGGGAGAAgtaagtagacatagataacctttggtattctgggtctttaaactttttctctttagtattttttgtctgcttttgatataatatggtcattttctttcatatttgtttcag

- - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - -  GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA