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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTATTTTCCAATCGGGTGATTATGATTTGGGCCTATCTTCAAAgtaagtcataaagattttcatttttattttctttatctgatatattaatcttcctgagttgtgtttcttgttggtgtagtaaggataactgtatgcataa...

Basic information

species Glycine max
transcript GLYMA03G22740.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G063775_T01 (Zea mays), 5'ss of exon 5
GTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTATTTTCCAATCGGGTGATTATGATTTGGGCCTATCTTCAAAgtaagt---cataaagattttcatttttattttctttatctgatatattaatcttcctgagttgtgtttcttgttggtgtagtaaggataactgtatgcataa
|  ||||||| ||||||||||||||||| ||||| || ||||| || |||||    || || || || ||    ||| |  |  | ||  |||| |  ||||||||   | |     | | |  ||| ||| | | ||    | | |  |   |   ||  || |||      ||||  |      | | | | | |  |   
GAATTGTTGTCCTTGCTGAAAGTTTTGGTCATTCTGTTTTCAAAGACTCACTTCTCCGCATCTTTCAGTCAACAGATGACAACCTTGGTTTATCATTCAAgtaagtgttcttctgtctatcctatttgattgtttctagtctagagagaagattaaatgcatt-tgtaaggacttggactgagtcagttcagtttttttac--

upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 4
GTCTTGTTGTACTTGCTGAAAGTTTTGGCCATTCAGTGTTCAAGGATTCACTAAAGCGTATTTTCCAATCGGGTGATTATGATTTGGGCCTATCTTCAAAgtaagtcataaagattttcatttttattttctttatctgatatattaatcttcc-tgagttgtgtttcttgttggtgtagtaaggataactgtatgcataa-
|  ||||||| ||||||||||||||||||||| |||| || | ||| || || || | | |||| || ||   |||||||||| | || ||||| || |||| |||| |     |  |||| | |   |||    | || |   | |||      | |||  | ||| ||  | |  |  | |   | |    |||  | | 
GAATTGTTGTGCTTGCTGAAAGTTTTGGCCATGCAGTTTTTAGGGACTCTCTTAAACATGTTTTTCAGTCAACTGATTATGATCTTGGTCTATCATCCAAgttagtctttcttgtactcatgtctgcattcaagttgtgttggttaaatgacatattagtaatatttgtt--tagaatcttgaaatttatgtcatggtttaa