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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGTCAAAGTTAGACTTCAAGCTGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgtctgtgcaatccaatataatttatggaagagaaaaacatatttggttcattttagtttgtgattatttttattctaacatacatcgatctaacacacag

Basic information

species Glycine max
transcript GLYMA03G14780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G14780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 4
TCTTGTCAAAGTTAGACTTCAAGCTGAAGGAAAATTACCTCCTGGTGTTCCCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgt------ctgtgcaatccaatataatttatggaagaga------aaaacatatttggttcattttagtttg-tgattatttttattctaacatacatcgatctaacacacag
 ||||| |||||| |||||||| ||||||||||||| || |||||||| || || ||||| || ||||| || ||||||||||| ||||| |||||||||||         |||  |   ||  |  ||||  |  ||       | ||  |||||   |    || ||||| ||  | | |  | | | ||  |  |  |||||| |   ||
CCTTGTGAAAGTTCGACTTCAATCTGAAGGAAAATTGCCACCTGGTGTGCCAAGACGCTATTCCGGATCATTGAATGCTTATTCTACAATAGTGAGACAGgtggaacatcttgcccttatatgcatattatttattagtttctttataatttatttaagtttcatttgtttgatgtctttatccaattttactaatttgtatctaaaatttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193663465|gb|FK602321.1|FK602321
EST:     CCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAG                         GAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
genomic: CCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgtctgtgcaa ... taacacacagGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
EST: gi|22930316|gb|BU547463.1|BU547463
EST:     ATCTTTAAATGCTTATTCAACAATTGTGAGACAG                         GAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
genomic: ATCTTTAAATGCTTATTCAACAATTGTGAGACAGgtctgtgcaa ... taacacacagGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
EST: gi|15286162|gb|BI470053.1|BI470053
EST:     CTTATTCAACAATTGTGAGACAG                         GAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
genomic: CTTATTCAACAATTGTGAGACAGgtctgtgcaa ... taacacacagGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
EST: gi|151396786|gb|EV266659.1|EV266659
EST:     CCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAG                         GAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT
genomic: CCAGGCGCTACTCTGGATCTTTAAATGCTTATTCAACAATTGTGAGACAGgtctgtgcaa ... taacacacagGAAGGAGTTGGGGCTCTTTGGACTGGGCTTGGCCCCAATATAGCAAGAAAT