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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATGCTCCCCTAAATTATTCTCCAGGACGAGTGAAGCCTAAATTCAAGAAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGGgtaagcattttttgaagtgccactttttttctgagatcaagttgctctagctaatgtatgatgtaaggagagacttgagcataattaaccctgttcacaa...

Basic information

species Glycine max
transcript GLYMA03G13780.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9900523|gb|BE609491.1|BE609491
EST:     AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGG                         GCTTTCTGTTGGGCTGGTTGCACTTCTCCA-GGTGTTGATGCAA-TGATCA
genomic: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGGgtaagcattt ... aatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
EST: gi|9900517|gb|BE609485.1|BE609485
EST:     AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGG                         GCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
genomic: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGGgtaagcattt ... aatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
EST: gi|16343586|gb|BI969181.1|BI969181
EST:     AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGG                         GCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA
genomic: AAATATCAGTGCATCTTGTGGGTCTTCTCCCTGATCATTCTAGTTGTTGGgtaagcattt ... aatgtaacagGCTTTCTGTTGGGCTGGTTGCACTTCTCCAAGGTGTTGATGCAAATGATCA