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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaaaactaattaagttgcttattcattatcatcacaatccattataagtgttttcttttccttaatttgcaagcgattttgttgtttcctccatattgacgctgataccagattttttgtggtgcag

Basic information

species Glycine max
transcript GLYMA03G12240.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G375504_T01 (Zea mays), 5'ss of exon 3
TTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaaaactaattaagttgcttattcattatcatcacaatccattataagtgttttcttttccttaatttgcaagcgattttgttgtttcctccatattgacgctgataccagattttttgtggtgcag
| ||||||| |||||||||||    ||||| |||||||| || ||||| |||||||| |||||| | ||||||||||| |||||||   | || | ||| ||  |      |  | || |  ||   |||  | || |   |  | | || |   | | ||  |    |  |  | |  | |||   |                                              
TGCTGATCTGCAAAAGCCACAGATGGAGCTGGATGGAAAGGCTTGCGCTGCTGTTGGTCAGAGTGGCCTCATGGCTCTTTATGATATGCTATTTACCCAAgtgtgtttgtga--acttgatatggaaatttgtcattagttcggtgccttgtccatatgtttctaatgtcgaccttcccgtgatgcag----------------------------------------------

upper sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 4
lower sequence: AC203754.4_FGT008 (Zea mays), 5'ss of exon 4
TTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaaaactaattaagttgcttattcattatcatcacaatccattataagtgttttcttttccttaatttgcaagcgattttgttgtttcctccatattgacgctgataccagattttttgtggtgcag
| ||||| | |||||||||||    ||||| |||||||| || ||||| || ||||| |||||| | |||||||||||||||||||   | || |  || ||  |        |  |||| ||||| || ||   |  ||    ||  || |  |  || ||  |   ||||| |  |        || ||                                           
TGCTGATATGCAAAAGCCACAGACGGAGCTGGATGGAAAGGCTTGCGCTGCCGTTGGACAGAGTGGCCTCATGGCTCTCTATGATATGCTATTTACTCAAgtgtgt-------ttgttaacttgct-atccaaatttgtcg---tcagttctgcgccttgtccatatgttaatgttgagcttcccatgatgcag----------------------------------------

upper sequence: GLYMA03G12240.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 4
TTCTGATCTTCAAAAGCCACAAGGAGAGCTTGATGGAAAAGCATGCGCGGCTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaaaactaattaagttgcttattcattatcatcacaatccattataag---tgttttcttttc----ctta---atttgcaagc-gattttgttgtttcctccatattg-acgctgataccagattttttgtggtgcag-------------------------------------------
   |||||| || || || |||   |||||||||  |||||| || || ||||| || |||||||||||||||||||| ||||||||  | ||||||||||| |  | | ||   ||| | |  |  ||||   |  ||   | | ||||| ||    | || |   |||    ||||   ||||    |  || |  | |  || |    | |    |  |    |||| |  |   || ||  |                                           
GGATGATCTCCAGAAACCGCAAATTGAGCTTGATTCAAAAGCTTGTGCAGCTGTCGGACAGAGTAGTCTCATGGCTCTGTATGATACTTTATTCAGCCAGgt-gaaaaataatctatttactatcgcattctggaatatggaattgcattagaacatttattatggcttcagtacttacctatttatgggtagactaagctagttaccatttctaatgcattagccccagctggtggctgttgtggttaatttctttgaggtcctaatgaagcagtcgtctttatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192315384|gb|FK009648.1|FK009648
EST:     CTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAG                         CTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTTTTCAGAGAT
genomic: CTGTTGGGCAGAGTAGTCTCATGGCTCTCTATGATACCATGTTCAGCCAGgttggcacaa ... tgtggtgcagCTTGATGTGACTTCTTCCCAACTTCTTGTGAATGATGGGTTTTTCAGAGAT