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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccattcataatcttttatctttagaacattggatattggacagacactgataaccttctatggactatag

Basic information

species Glycine max
transcript GLYMA03G10900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G10900.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 5'ss of exon 7
TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccattcataatctttt-------atctttagaacat---tggatattggacagacactga---taaccttctatggactatag
||||  | || |||||| | ||||||||||| || || || || ||||||||  | || ||||||||||||||||| || ||||||||| |||| ||| ||||||||  |||| | | | ||        | || || || |    ||| |    |     || |    |||  || | | | | | ||
TGCTCCGTGATGAAGGAATCGCATCTTTCTATTACGGTCTAGGACCTTCTCTAGTGGGGATAGCTCCATATATTGCTGTAAACTTTTGTATTTTCGATCTgtgagtct-ttcaaactttctttctatctgttttaagtacctgtacggaaacaaaatttgaaccgggcttaatattgttttggcaacag

upper sequence: GLYMA03G10900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
TGCTAAGAGAGGAAGGATTTGCATCTTTCTACTATGGCCTTGGGCCTTCTCTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccattcataatcttttatctttagaacattggatattgga-cagacactgataaccttc-tatggactatag---------------------
| ||||||||||||||| ||||||| |||||  | || ||||| ||||||||  |||||||||| || || ||||| ||||||||||| ||||||||||||||||     || |   |  | | | ||| | | | |    |  || || | || ||  |  ||| | ||    ||                       
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctctt--cccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6666551|gb|AW278002.1|AW278002
EST:     CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTT                         ATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT
genomic: CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccat ... tggactatagATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT
EST: gi|298181806|gb|HO025981.1|HO025981
EST:     CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTT                         ATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT
genomic: CTGATTGGAATAGCTCCATATATTGCAGTGAACTTTTGTGTTTTTGATTTgtgagtccat ... tggactatagATTAAAGAAGTCATTGCCAGAGAAATATCAAAAGAGAACTGAAACATCTCT