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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCCTTCCACAATTACCGTATATGGTCTTTTTTGGGCCTTGGAATGACCACTTACACGGCTTGGTACCTTGCTATTGCAGCCATCCTTCATGGCCAGgtgataaacacttgtctatagcaacagtttttatggcatatacttgaaatattgaaacaactaaactactagtcaattcttgtgttatgatattcaacatgttgcaaatcatggttgtag

Basic information

species Glycine max
transcript GLYMA03G09140.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G09140.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ36050 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCCTTCCACAATTACCGTATATGGTCTTTTTTGGGCCTTGGAATGACCACTTACACGGCTTGGTACCTTGCTATTGCAGCCATCCTTCATGGCCAGgtgataaacacttgtctatag----caacagtttttatggcatatacttgaaatattg--aaacaacta-aactactagtcaattcttgtgttat-gatattcaacatgttgca-aatcatggttgtag---------------------------------
 || || |||||||| ||  | || ||||| ||  |||| ||||||||||| |||||||||||||||||| |  | ||  | ||  || | |||||| |||||| | |  | | |  | |     ||   | |  || |       | | |||  |||    | ||||| || ||    ||| || |  ||  || ||| || ||| | || || |  | ||||   |                                  
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGAATGACAACTTACACGGCTTGGTACATGACAATCACTGCTCTCGTCCATGGCAAGgtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcatttatcatgggatagattttaaacttcttacataggcgtggtctaacatcaataattctcacacttcttcacttttgcag