Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGGCTAGCCTTCAACTGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTATAGCATGTGCAAGgtagcacctttgcttcgatttttaaggcaacctggagtaatctaaagtgggttctcatctattttttcaacgaagttttttttttcttttctctcatcttttttgttgcttgcttctttgatgcaaacag

Basic information

species Glycine max
transcript GLYMA03G09100.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G09100.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 4
TTGATGGGTTACTTGGTCCATATTGGAAAGCCCTGGGGCTAGCCTTCAACTGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTATAGCATGTGCAAGgtagcacctttgcttcgatttttaaggcaac-ctggagtaatctaaagtgggttctcatctattttttcaacgaagttttttttttcttttctctcatcttttttgttgcttgcttctttgatgcaaacag
||||||||||| | ||||| || ||||||||  |||| || |||||||||||||||||||| |||||||||||||| || ||||| ||||| |||||||||||  | |||| ||||  ||  | ||   |   ||||  |||||||  | || |||  | |  |||   |||    ||  ||  |||||       |                                  
TTGATGGGTTATTGGGTCCTTACTGGAAAGCAGTGGGTCTGGCCTTCAACTGTACTTTCCTCCTCTTTGGATCTGTCATTCAGCTGATAGCGTGTGCAAGgtaagatcttt-cttcagttcctcagctgatattggaaaaatctaatcttggatct-gtttgcttt---aactgttttggttggttcttgatgagaacag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209726838|gb|BW658346.1|BW658346
EST:     TGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTATAGCATGTGCAAG                         TAACATATACTACATAAATGACAAATTGGATAATCGGACTTGGACTTATAT
genomic: TGTACTTTCCTTCTCTTTGGATCTGTGATACAGCTTATAGCATGTGCAAGgtagcacctt ... atgcaaacagTAACATATACTACATAAATGACAAATTGGATAAACGGACTTGGACTTATAT