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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAGgttagctgttaaactttctttcatgaatttcttttccccaatattgcatgttcatgactaagttatacttttggatttatag

Basic information

species Glycine max
transcript GLYMA03G08120.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G08120.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G51870.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAGgttagctgtta--aactttctttcatgaatttctt------ttccccaatattgcatgttcatgactaagttatacttttggatttatag----------
|||||  | ||  ||||||||||||| ||||||||||| |||||||| | ||||||||| || |  |   | || |   | ||    |  |       |   | ||      ||    |||| |    || | || || |  ||             
GTGATAAGAGTGTTACCTTACAGTGCGGTCCAGCTTTTGGCTTATGAGAGTTACAAGgtgagtttgtgtcatctatagcttattggctattgggattatgtactaaagagaaatagaaatgattgttataaaattctgtagctacttgtcctagaaa

upper sequence: GLYMA03G08120.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 4
GTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAGgttagctgttaaactttcttt---catgaatttcttttccccaatattgcatgttcatgactaa-gtt--atacttttggatttatag--------------------
||||| ||  | |||||||||||||| |||||||| ||||||||||||| ||||||||| |   ||    |  |||||   ||| | ||    |      |||| | || |  |||| ||  |||  | || ||  ||||| | |                    
GTGATACGTATCATACCTTACAGTGCCGTCCAGCTGTTTGCTTATGAAACTTACAAGgt-aatggtggcgccatctttaagcatcatttagcatgttgttatat-ggatctcaatgattagtgtttgagacattctgattttttgttttacacatgaatttctag

upper sequence: GLYMA03G08120.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S52_69V6.2 (Physcomitrella patens), 5'ss of exon 6
GTGATTCGGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAGgttagctgttaaactttctttcatgaatttcttttccccaatattgcatgttcatgactaagttatacttttggatttatag------------------------------------------------------------------------
||  | || || |||||||||||||| || || ||||||||||||||  |||||||||| | |  |     ||  || | |  |||   |     || |   || |||    |      || |   |      |||  |                                                                        
GTTGTCCGTGTCATACCTTACAGTGCGGTGCAACTTTTTGCTTATGAGGTTTACAAGgt-aacattcctcattgattaccttgattatctggaagcagtcgggcgtgtcttgggtgggtttttgtctcgcagattactgaagtgatcatgtgccagtctgtgttgatagatgtatttctgatatccagtatgcggtgtctttgggtcccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15287432|gb|BI471323.1|BI471323
EST:     GGGTTATACCTTACAGCGCTGTCCAGCTTTTTGCTTATGAAATTTACAAG                         AAAATATTCAAGGGAAAGGATGGTGAGCTCTCTGTTCTGGGAAGACTTGCA
genomic: GGGTTATACCTTACAGTGCTGTCCAGCTTTTTGCTTATGAAATTTACAAGgttagctgtt ... ggatttatagAAAATATTCAAGGGAAAGGATGGTGAGCTCTCTGTTCTGGGAAGACTTGCA