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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGgtgtgttgtgctatatgaacatgattttatcattccactgacaattatccaagaactttcactgaagggtcaaataaagctttatttatttggtgcttat...

Basic information

species Glycine max
transcript GLYMA03G04410.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G04410.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g60150.1 (Oryza sativa), 5'ss of exon 4
GAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGgt-gtgttgtgcta---tatgaacatgattttatcattccactgacaattatccaag---aactttcactgaagggtcaaataaagctttatttatttggtgcttat
 |||    | || ||| ||||||||||||| ||| |||||||| ||||||||||||||||||| || || || || || ||||| |||||||| || ||||| ||       ||   |||| |    ||  | | | |  ||  ||  ||  | ||    || ||    |        ||| | |  || |    ||| ||      
TAAGAAGCTGAAGCTTACTGATTTTGGTCTTGCACGAGAAGAAACTGTGACTGAAATGATGACAGCTGAAACAGGGACATACCGCTGGATGGCCCCAGAGgttgtaaaccattaatttatgcaacaaataatttaaattaac-aacttttgcctaaagccaatttctttttttttaaaaaaaagactttcacacctttagt------

upper sequence: GLYMA03G04410.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G072584_T03 (Zea mays), 5'ss of exon 3
GAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGgtgtgttgtgctatatgaacatgattttatcattccactgacaattatccaagaactttcactgaagggtcaaataaagctttatttatttggtgcttat-
 |||    | |||||| |||||||||| || ||| | |||||| ||||||||||||||||||| || || ||||| |||||||| |||||||| || |||||        |||| |        |    | |  | | || ||||||   |   |   | |    |  || |||    |||    |      |||||    
CAAGAAGCTAAAACTTACTGATTTTGGACTTGCACGTGAAGAAACTGTGACTGAAATGATGACTGCTGAAACTGGGACTTACCGATGGATGGCCCCAGAGgttgtaaacactatctttctgcattaacttaaagctagtg-caattacatactgaaactaaaaccacagtaaaactttgctcctgtagcaatgtgctaggc

upper sequence: GLYMA03G04410.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G01850.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGgtgtgt-tgtgctatatgaacatgattttatcattccactgacaattatccaagaactttcactgaagggtcaaataaagctttatttatttggtgcttat
 || || || || ||||||||||| || || || || |||||||| |||||||| |||||||| || |||||||| ||||||||||||||||| |||||||| | |    ||| | | |   |  |   ||||| |||||       ||   | ||    || |  | |      |   | |    | ||  |  |     
CAAATCCGTCAAGCTTGCTGATTTCGGGCTTGCTAGGGAAGAATCCGTGACTGAGATGATGACTGCTGAGACTGGGACTTACCGTTGGATGGCTCCTGAGgtttttgcccgctctgtcattcttgtaa-atcataccactatttgacattataaaaaagcca-tatatgcatgtcttgtgttcgtgtcatccgtag-----

upper sequence: GLYMA03G04410.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0058g01180.t01 (Vitis vinifera), 5'ss of exon 4
GAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGgtgtgttgtgctatatgaacatgattttatcattccactgacaattatccaagaactttcactgaagggtcaaataaagctttatttatttggtgcttat---
||| || || || ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||||| || |||||||||||||| || ||||| || |       |||  | | ||| | | |||  | | || || || || |    || |  |  |   ||  | | ||   ||| || |   | ||     
GAAATCTGTAAAGCTTGCAGATTTTGGTCTTGCAAGGGAAGAATCTGTGACTGAGATGATGACCGCAGAAACTGGGACATACCGTTGGATGGCTCCCGAGgtttgcttcttataatgctcttcattatttaatt--aatcaccatcattca-gtttgttaatagttgaagcatgtgatgccccattgatgtctaggttggaat

upper sequence: GLYMA03G04410.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ09179 (Selaginella moellendorffii), 5'ss of exon 4
GAAGTCAGTTAAACTTGCTGATTTTGGTCTGGCAAGAGAAGAATCTGTGACTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGgtgtgttgtgctatatgaacatgattttatcattccactgacaattatccaagaactttcactgaagggtcaaataaagctttatttatttggtgcttat
 ||||| || |||||||| || ||||| |||||  ||||||||  ||| || ||||||||||| |||||||| || || || || |||||||| || |||||| | | |||| | |   ||| || ||  ||||          | |  ||| | |||    |  |    |    |                        
AAAGTCTGTAAAACTTGCGGACTTTGGACTGGCCCGAGAAGAAAGTGTTACAGAAATGATGACTGCAGAGACAGGGACGTATCGCTGGATGGCTCCAGAGgtgagatatgctct-tatccataatctt-ccattttgt----gctaaaacaaaaccttctcttttactccctcgcag-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21677600|gb|BQ629951.1|BQ629951
EST:     CTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAG                         TTGTACAGTACCGTGACATTGCGTCAAGGTGAGAAAAAGCATTACAACAAT
genomic: CTGAAATGATGACGGCAGAGACTGGAACTTACCGTTGGATGGCACCTGAGgtgtgttgtg ... gcttttacagTTGTACAGTACCGTGACATTGCGTCAAGGTGAGAAAAAGCATTACAACAAT