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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGTGACTGCATCCTTGCTGCCTCATTTCATAGCATTCTTTAGTGATGGAGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGgtagggtctcagaacatggttctaggctagctgttggttccatctgcaaatttctataacagttttggattccgtgcag

Basic information

species Glycine max
transcript GLYMA03G02930.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301934|gb|FG995552.1|FG995552
EST:     AGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCG                         TTTTAAACCTGGCCTTTGCACTGAGCGTCTTAG-ATT-CTCATCATGCACA
genomic: AGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGgtagggtctc ... ttccgtgcagTTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACA
EST: gi|27424346|gb|CA935866.1|CA935866
EST:     AGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCG                         TTTTAAACCTGGCCTTTGCACTGAGCGTCTTA
genomic: AGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGgtagggtctc ... ttccgtgcagTTTTAAACCTGGCCTTTGCACTGAGCGTCTTA
EST: gi|15287842|gb|BI471733.1|BI471733
EST:     AGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCG                         TTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACA
genomic: AGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGgtagggtctc ... ttccgtgcagTTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACA
EST: gi|151408618|gb|EV278426.1|EV278426
EST:     AGAAATTCCTGGAACACCTGGTTCTCTTGCTACAACTTTTCTTGCTTTCG                         TTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACA
genomic: AGAAATTCCTGGAACACCTGGCTCTCTTGCTACAACTTTTCTTGCTTTCGgtagggtctc ... ttccgtgcagTTTTAAACCTGGCCTTTGCACTGAGCGTCTTAGGATTTCTCATCATGCACA