ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST

Sequence

atgc intronic sequence ATGC exonic sequence

ACAATCTCTTACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTTTCAGgtatttatatttgcagtatttttataaatgtagttgtcctttgcttttgggcttgtcaattacttttttgattattgcaatattctttatttgtttcag

Basic information

species	Glycine max
transcript	GLYMA03G01850.1
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GLYMA03G01850.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os10g37740.1 (Oryza sativa), 5'ss of exon 4

ACAATCTCTTACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTTTCAGgtatttatatttgcagtatttttataaatgtagttgtcctttgcttttgggcttgtcaattacttttttgattattgcaat--attctttatttgtttcag---
|   | || |||||||| |||||||| |||||||||||||| |||||| | ||||||||||||| |   ||  || | |     |   | | | |   | | |   |   |    |  |  |  |||  |  ||  |  ||  |    |||||  |   |    
AAGGTATCATACATGGCAGAACGTGTAGTTGGTACTGGTTCATTTGGTGTAGTTTTTCAGgtatattatttcacattttgccattctgtatcgctactcctcgtcatgatggaaatttacaatatttgggcataaagttattgaccagttattgatacaaacag

upper sequence: GLYMA03G01850.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G109624_T01 (Zea mays), 5'ss of exon 4

ACAATCTCTTACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTTTCAGgtatttatatttgcagtatttttataaatgtag----ttgtcctttgcttttgggcttgtcaattacttttttgattattgcaatatt---ctttatttgtttcag--
|   |||| |||||||| ||||| || |||||||||||||| |||||||| ||||| ||||||     ||||||  | |||      || ||     | |||  ||  || | |   ||  |  ||    |        || | | ||   |||   |||| | |   
AAGGTCTCATACATGGCGGAACGGGTTGTTGGTACTGGTTCGTTTGGTATAGTTTTCCAGgtacgc-catttgccatctttggcctcatataacacttagtcacttatttctagaaatggaagataacaatgctggggctgaagtcttgaacttatcttgtataacag

upper sequence: GLYMA03G01850.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G131853_T01 (Zea mays), 5'ss of exon 4

ACAATCTCTTACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTTTCAGgtatttatatttgcagtatttt---tataaatg-tagttgtcctttgcttttgggcttgtcaattacttttttgattattgcaatattctttatttgtttcag
|   |||| |||||||| |||   || |||||||||||||| |||||||||||||| ||||||     ||||||  | ||||      | ||   | || |   | |   | ||  ||  ||||  || |    |  ||      | |  |  | | |  |||
AAGGTCTCATACATGGCAGAATTGGTTGTTGGTACTGGTTCGTTTGGTATTGTTTTCCAGgtacgc-catttgccatcttttggcctcatataacacttatttctagaaatgggagttcacaat-gctgtggccaaaatcattgaacttatcgtgtataacag

upper sequence: GLYMA03G01850.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 4

ACAATCTCTTACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTTTCAGgtatttatatttgcagtatttttataaatgtagttgtcctttg-cttttgggc---ttgtcaattacttttttgattattgcaatattctttatttgtttcag-----
||| |||| ||||||||||| || |||||||| |||||||| |||||  | |||||||||||| ||  | |||    || || ||| |  | ||   |  ||| | ||||||    ||  ||  || | || |  | |||    |||  ||||||| |  ||      
ACAGTCTCCTACATGGCTGAGCGGGTGGTTGGCACTGGTTCCTTTGGGGTCGTTTTTCAGgtacttggaattg----atcttgatataccttgtgagcaattggcctttgggtaattttccagataatattgttctcatttttttatgttttattt-tgacaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|209697171|gb|BW672936.1|BW672936

EST:     ACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTTTCAG                         GCTAAGTGCCTTGAAAC
genomic: ACATGGCTGAACGTGTGGTTGGTACTGGTTCTTTTGGTATTGTTTTTCAGgtatttatat ... tttgtttcagGCTAAGTGCCTTGAAAC