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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataagattttttttcagtattagcagagctgtttaccaaaacagtatatataaagcgttcagtgtataaatattaaattctttttttttatac...

Basic information

species Glycine max
transcript GLYMA03G01200.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01200.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g39580.1 (Oryza sativa), 5'ss of exon 2
ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataagatttttt----ttcagtattagcaga--gctgtttaccaaaacagtatatataaagcgtt-cagtgtataaatatt-aaattctttttttttatac---------------------------------------------------------
 ||||| ||||| || ||||||||| |||||||||| |||||||| ||    ||||||||||| |||||||| ||||| ||| | | |  |||  | |||||||| ||    || ||       |  || |  |  ||   |   |||| |  |      | |       || ||    ||     || | |     |  ||  || |                                                         
GCCTGTGGATGGTAGATTTGAGCATATAGTTCTTTCCTGCAATGCCACAATGGACCATGCCATTATTTGGATCGAGAGGGAAGCACAAAAGGCGTTGGATgtaagaaaccgtatattgccaacctttgtttctgtggattacaacttacaagcatgtagcacaggcgtttttacatcccattgtggttgagacggcgtcgttagattcatcttgcaagttgcttgttaaatgtctgatggtgaccatggctgtgcatatgaacag

upper sequence: GLYMA03G01200.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G085939_T01 (Zea mays), 5'ss of exon 4
ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataagattttttttcagtattagcagagctgtttaccaaaacagtatatataaagcgttcagtgta-taaatattaaattctttttttttatac
 || || ||||| || ||||||||  |||||||||| |||||||| ||  | ||||||||||| |||||||| ||||| ||  |||    |||| | ||||| ||          | || |  |  ||   ||   || ||||      |   |  || || |     || |  ||  | ||     |||      | | |
GCCGGTGGATGGTAGATTTGAGCACATAGTTCTTTCCTGCAATGCCACAGCGGACCATGCCATTATTTGGATTGAGAGGGAGGCCCAGAAGGCTTTGGATgtgagtttcttacaatcttatatgcttttctagtcatgcttactctc-tatccttaatcaacctccttgtatcctactttttccccccttaggccatgttc

upper sequence: GLYMA03G01200.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv15s0046g02650.t01 (Vitis vinifera), 5'ss of exon 4
ACCTGTTGATGGGAGGTTTGAGCATTTAGTTCTTTCTTGCAATGCAACTTCTGACCATGCCATCATTTGGATAGAGAGAGAATCCCGACGGGCTCTCGATgtaagcaataagattttttttcagtattagcagagctgtttaccaaaacagtatatataaagcgttcagtgtataaatattaaattctttttttttatac---
|||||| |||||||||||||||||  |||| |||||||||||||  ||||| ||||||||||||||||||||||||| |||||||| |  |||| | ||||||||   | | | |||| || | |       ||| | |     |  |     |  | | |  |||||    ||   | ||| |  || |   | ||||    
ACCTGTGGATGGGAGGTTTGAGCACATAGTACTTTCTTGCAATGTGACTTCGGACCATGCCATCATTTGGATAGAGAAAGAATCCCAAAAGGCTTTTGATgtaagttttca-acttttcttgattgagttttgagtt-tcaggtagtaattagtgaaaacaatgttcaaatgattgttcttatac-ctctgcatgtatatttt