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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGGGCTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCACAGCACAAACAATGCTTACATGTTTCGGCAGTTTGATAACATGACTAATACAAAGgttaagtcttaatgcatctcccataagaccttcacttaatcaatcactgttttgaattatttatcgcatcaatgaaactagaaactataaaataaattaatttacatgttattaagatttatatgcacaaattacag

Basic information

species Glycine max
transcript GLYMA03G00900.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G00900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0056g00820.t01 (Vitis vinifera), 5'ss of exon 4
GAAGGGGCTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCACAGCACAAACAATGCTTACATGTTTCGGCAGTTTGATAACATGACTAATACAAAGgttaagtcttaatgcatctcccataagaccttcacttaatcaatcactgttttgaattatttatcgcatcaatgaaactagaaactataaaataaattaatttacatgttattaagatttatatgcacaaattacag
||| ||  |||||||||| ||||| |||||||||||||||||||| || |     || || ||||||||||  ||||||||||| ||| | ||| ||||||||  || |   | ||||||     |||| |  |     |   |   | || | |||   | ||    |  ||   |                                                            
GAAAGGTATAAAAGGGGCTGTTGATAAAGCTGAAGAAATTGTTCAGAGTATGCCAAACGCATACATGTTTCAACAGTTTGATAATATGGCCAATGCAAAGgtt--gtttctgt-catctcatgccagacataaagcctttttctttatattctaaatatatgattttgtggatttcag-----------------------------------------------------------