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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGCCAGGGATCAGTTTGTGATTCGTGCTGGTTCAGATACTGAAGTTTTGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggacattttatttcagtatcttgcactagttaatatttacaattgccctacttttacatgattttgtattgctgctggcctgggttttcatgtatttttttaattacag

Basic information

species Glycine max
transcript GLYMA03G00470.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193591224|gb|FK546437.1|FK546437
EST:     TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCA                         TTTTGGACAGAGAGTTTTGTGC
genomic: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGC
EST: gi|207824776|gb|GD794640.1|GD794640
EST:     TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCA                         TTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA
genomic: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA
EST: gi|51337951|gb|CO981817.1|CO981817
EST:     TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCA                         TTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA
genomic: TGTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA
EST: gi|193673056|gb|FK618918.1|FK618918
EST:     GTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTGACA                         ATTTG-ACAGAGAGTTTTGTGC
genomic: GTGGAACGATGCCAGGCATTTAAAGCCTGATCCTGTTTATAAGCGTG-CAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGC
EST: gi|13240090|gb|BG359399.1|BG359399
EST:     AAGCCTGATCCTGTTTATAAGCGTGCA                         TTTTGGACAGAGAGTTTTGTGCAATGGTCTCTTTTGGGGACATATTTGGCA
genomic: AAGCCTGATCCTGTTTATAAGCGTGCAgtgcgtggac ... ttaattacagTTTTGGACAGAGAGTTTTGTGCAATGGTCTCCTTTGGGGACATATTTGGCA