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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtttgtttattataaaattaattctatttgtttctttgtattttgtttaaaaaatataggaaaaggatattaaacttgttctggttattgcag

Basic information

species Glycine max
transcript GLYMA02G47860.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47860.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 5'ss of exon 4
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtttgtttattataaaattaattctatttgtttctttgtattttgtttaaaaaat-ataggaaaaggatattaaacttgttctggtta-----ttgcag
|||||||||||||||||||||||||||||| | || ||||| ||| | ||  ||||  | || |   | |||||||||||||| ||||| || ||||||||||    | | || |       |        |||| |  ||| |||| || |||| |||   |   |||  |   |||||| |  ||       |||||
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTTTAGGTGCAGGGATACCAAACACAGTTGTTTGCAGCGCAGTTAACAAAGTTTGCGCATCTGGCATGAAAGgttacagt-tcatgaggcagcct--------ttctataaattctgttcaagaaattatatttacctgatcatgggcttgtttttatttcctttctgcag

upper sequence: GLYMA02G47860.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G866758_T02 (Zea mays), 5'ss of exon 4
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtttgtttattataaaattaattctatttgtttctttgtattttgtttaaaaaatataggaaaaggatatta----aacttgttctggttattgcag-----------
|||||||||||||||||||| ||||||||||| || || || ||| | || || ||  | || || |||||||||||||| |||||||| || ||||||||||||      ||  |||| || || | |||   | |||| | || | | |    | || |    || ||||    | | || ||| ||| |                
TTGGGGCAAGCTCCTGCAAGGCAAGCTGCTCTGGGTGCCGGGATACCAAACTCTGTTGTTTGCACCACTGTTAACAAAGTCTGTGCATCTGGCATGAAAGgtttga-----atcgaatttat-ctgtctgtccttgtgtactctgctcagagttcacagaagtgagagattacctgaccatgctcttgttttcctttcctatatgcag

upper sequence: GLYMA02G47860.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0057g01200.t01 (Vitis vinifera), 5'ss of exon 4
TTGGGGCAAGCTCCTGCAAGACAAGCTGCTCTTGGAGCAGGAATATCCAATTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtttgtttattataaaattaattctatttgtttctttgtattttgtttaaaaaatataggaaaaggatattaaactt---gttctggttattgcag
|| || || |||||||| |||||||||||  | || ||||||||| | ||||||||  ||||||| ||  | ||||||||||||||||||||||||||||||     | |   |  |  ||    || | || || | |           | | || ||   ||    ||    |||    | ||||| |||||||
TTAGGACAGGCTCCTGCTAGACAAGCTGCATTAGGTGCAGGAATACCTAATTCAGTGGTCTGTACCACCATCAACAAAGTTTGTGCATCAGGAATGAAAGgtgccactctatcatcagaaacagcatcttttcctctttccccaaaactgacactaaagtgtaatatcatggttcttttaatgctggtaattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197389|gb|HO044868.1|HO044868
EST:     TTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAG                         CTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTG
genomic: TTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtttgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTG
EST: gi|298168588|gb|HO009518.1|HO009518
EST:     TTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCACCAGGAATGAAAG                         CTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTG
genomic: TTCAGTAATCTGTACTACTGTTAACAAAGTTTGTGCATCAGGAATGAAAGgtttgtttat ... gttattgcagCTGCAATGCTTGCTGCACAGAGTATTCAATTAAGCATAAATGATGTTGTTG