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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTTAATGATGTTTCACCTGCAGTTGATGAGTCTGATTTGTCCCTGAAGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgttataatgttcaataatgtgtcagtttgtcattaatttggaaaattccatttgatttcattcacaaaacagctcattgagagttttgttgcattgccttgtttggcag

Basic information

species Glycine max
transcript GLYMA02G46450.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17022059|gb|BM093093.1|BM093093
EST:     AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAG                         AGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
genomic: AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgt ... tgtttggcagAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
EST: gi|151397195|gb|EV267068.1|EV267068
EST:     TGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAG                         AGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
genomic: TGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgt ... tgtttggcagAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
EST: gi|208301779|gb|GE099009.1|GE099009
EST:     AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAG                         AGCGAGAGGTTGCACAAGGTTCCTGAATTTGTGAGTACGGTGCATGATCTA
genomic: AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgt ... tgtttggcagAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
EST: gi|193712473|gb|FK649636.1|FK649636
EST:     AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAG                         AGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
genomic: AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgt ... tgtttggcagAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
EST: gi|193607364|gb|FK558251.1|FK558251
EST:     AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAG                         AGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA
genomic: AGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgt ... tgtttggcagAGCGAGAGGTTGCACAAGGTTCTTGAATTTGTGAGTACGGTGCATGATCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCTTAATGATGTTTCACCTGCAGTTGATGAGTCTGATTTGTCCCTGAAGAAGTTGGATGAATATCAATCCGAGCTCCAAGAACTTCAAAAGGAAAAGgtaattctgttataatgttcaataatgtgtcagtttgtcattaatttggaaaattccatttgatttcattcacaaaacagctcattgagagttttgttgcattgccttgtttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA