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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGTTGGTTTTCATTCTGGTCTTCCATTTTGCACCAAGATGTGGGCATACGAATGTGCTAGTTTTTACTGGAATTTGTTCATTGATGGGTTCCCTCTCTgtaagtaaattaatttactgttatctctcctgcaatgtctctttgatgattgatctaaacttcaaagttttgcttactcaaagttatcaagtttaaaaca...

Basic information

species Glycine max
transcript GLYMA02G44980.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44980.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0009g03650.t01 (Vitis vinifera), 5'ss of exon 5
AGTGTTGGTTTTCATTCTGGTCTTCCATTTTGCACCAAGATGTGGGCATACGAATGTGCTAGTTTTTACTGGAATTTGTTCATTGATGGGTTCCCTCTCTgtaagta---aattaatttactgttat-ctctcctgcaatgtctctttgatgattgatctaaacttcaaagttttgcttactcaaagttatcaagtttaaaaca
 ||| |||||||||||||  |||||||||||||||||  ||||||    |||||||| |||||||| || || ||||||||||||||||| || ||||| ||||  |    ||  | ||||||| || || |  |  | | | |  |   |   ||| |||   ||  ||  ||    ||||   ||   |    ||| || | 
CGTGGTGGTTTTCATTCTCATCTTCCATTTTGCACCACAATGTGGAAGCACGAATGTCCTAGTTTTCACCGGCATTTGTTCATTGATGGGGTCTCTCTCGgtaaaaatgagatggaattactgtgatacttttgtttattatattatatttttctgacctagcattgcaaacttga--tactttgagccttt--ctttgaacct