Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaagtaacaatcttgtgtttatatgttgatcatgataaaatcatttggtggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttattttcag

Basic information

species Glycine max
transcript GLYMA02G44250.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6719571|gb|AW307218.1|AW307218
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAA                         GTAGTGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaag ... ttattttcagG--G---ATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG
EST: gi|209710100|gb|BW653555.1|BW653555
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAGT                         GGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCCTT
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaag ... ttattttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCATT
EST: gi|192301521|gb|FG994761.1|FG994761
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAA                         GTAGTGGATGTTTCCAACAATGATTTATGTGGTACAATTCCTACATTTGGG
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaag ... ttattttcagG--G---ATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG
EST: gi|14259491|gb|BG882399.1|BG882399
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|14259491|gb|BG882399.1|BG882399
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|14259491|gb|BG882399.1|BG882399
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|17021803|gb|BM092837.1|BM092837
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|17021803|gb|BM092837.1|BM092837
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|17021803|gb|BM092837.1|BM092837
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|8285001|gb|BE022560.1|BE022560
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|8285001|gb|BE022560.1|BE022560
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|8285001|gb|BE022560.1|BE022560
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|120530833|gb|EH258966.1|EH258966
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|120530833|gb|EH258966.1|EH258966
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|120530833|gb|EH258966.1|EH258966
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|14011806|gb|BG726728.1|BG726728
EST:     TGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: TGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|14011806|gb|BG726728.1|BG726728
EST:     TGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: TGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|14011806|gb|BG726728.1|BG726728
EST:     TGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: TGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|120531133|gb|EH259266.1|EH259266
EST:     GT                         GGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCAT
genomic: --gtagtgtaag ... ttattttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCAT
EST: gi|120531133|gb|EH259266.1|EH259266
EST:     GT                         GGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCAT
genomic: --gtagtgtaag ... ttattttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCAT
EST: gi|120531133|gb|EH259266.1|EH259266
EST:     GT                         GGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCAT
genomic: --gtagtgtaag ... ttattttcagGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGGCCAT
EST: gi|120530964|gb|EH259097.1|EH259097
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAA                         GTAGTGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaag ... ttattttcagG--G---ATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG
EST: gi|58020483|gb|CX707225.1|CX707225
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|58020483|gb|CX707225.1|CX707225
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|58020483|gb|CX707225.1|CX707225
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|21677284|gb|BQ629635.1|BQ629635
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|21677284|gb|BQ629635.1|BQ629635
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|21677284|gb|BQ629635.1|BQ629635
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|23726214|gb|BU761091.1|BU761091
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAA                         GTAGTGGATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaag ... ttattttcagG--G---ATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG
EST: gi|21601428|gb|BQ611759.1|BQ611759
EST:     AATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: AATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|21601428|gb|BQ611759.1|BQ611759
EST:     AATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: AATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|21601428|gb|BQ611759.1|BQ611759
EST:     AATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAGTA                       
genomic: AATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTT-AA--Agtagtgtaag ... ttattttc
EST: gi|120530517|gb|EH258650.1|EH258650
EST:     GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAA                         GTAGTGGATGTCTCCAACAATGATTCATGTGGTACAATTCCTACATCTGGG
genomic: GACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaag ... ttattttcagG--G---ATGTCTCCAACAATGATTTATGTGGTACAATTCCTACATCTGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGACTCAATGACAACCGACTAACTGGCCCAATTCCCAAGGAACTGTCTGCTGTTTCAAGCCTTAAAgtagtgtaagtaacaatcttgtgtttatatgttgatcatgataaaatcatttggtggtatcgtgaagatgtgtgctttcaaagagcctaaacattcactttattttcag

- - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - -  GCTGTT