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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTACAAAATCCCTACGATAGACACTATACCTAAACAGTTTAATGTTCAAATCCTCAACAGTGGGCACCACCAGCAACGTGTTCTCTCTTCAAAAGgtatgaacaaggagccaaggagttatcaaaaacctgtttgttcattggtcttatttatttattttcctcctgagtggacatcacttgtacatgaaacggg...

Basic information

species Glycine max
transcript GLYMA02G44000.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44000.2 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04580.1 (Arabidopsis thaliana), 5'ss of exon 9
TGGAACTACAAAATCCCTACGATAGACACTATACCTAAACAGTTTAATGTTCAAATCCTCAACAGTGGGCACCACCAGCAACGTGTTCTCTCTTCAAAAGgtatgaacaaggagccaaggagttatcaaaaacctgtttgttcattggtcttat-ttattta-ttttcctcctgagtggacatcacttgtaca-tgaaacggg
||| |||||||||| ||||| |||||||| || || ||||| || || ||||| || ||||||||||| || ||| || | || |||||||| || |||||| | | | | ||  ||| ||| | |||     || | | |   ||  | |||| || |||| | || ||  |   ||  |   | | ||    ||| || | 
TGGGACTACAAAATACCTACAATAGACACAATTCCCAAACAATTCAACGTTCAGATTCTCAACAGTGGTCATCACAAGAACCGCGTTCTCTCCTCTAAAGgt-ttagctaagaatcaatgagat-tcatcgctctctctctctcttttttttatcttgtttaatcttactttttgttgagctgaaatggtcttctgatacag-