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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAACAATGAGATTGCATTTTCTTGCATCAGAACGACGCCGTCCTGACCAATTTACAgtaagatcaagttttatcactgacaaatactatatgttcataatcttagtaccacagcttctgtaataaggatttatatcctaagattagtaaagcccac...

Basic information

species Glycine max
transcript GLYMA02G43910.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 3
CTTCTGGACATGCTATATCTTGAAAAGGGAGTATCAGATAGTTGCAACAATGAGATTGCATTTTCTTGCATCAGAACGACGCCGTCCTGACCAATTTACAgtaagatcaagttttatcactgacaa-atacta-tatgttcataat--cttagtaccacagc--ttctgtaataaggatttatatcctaagattagtaaagcccac
||||||||| || ||| | ||||||| ||||||| | ||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||| |||||||||| |||  |     | || ||| ||  |  |  | |||  |||| |   |      |||| | ||     | | | | ||  | || | |        
CTTCTGGACGTGTTATGTGTTGAAAAAGGAGTATGAAATAGTTGCAACAATGAGGTTACATTTTCTTGCATCAGAACGACGCCGGCCAGATCAGTTTACGgtaagatcaactttatttctcaataagatagtagcacttaaagaatgacttatttttattatctttctttcatgttagtctctttgctttgcttggaatt------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701364|gb|BW655960.1|BW655960
EST:     TGAGATTGCATTTTCTTGCATCAGAACGACGCCGTCCTGACCAATTTACA                         GTACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTA
genomic: TGAGATTGCATTTTCTTGCATCAGAACGACGCCGTCCTGACCAATTTACAgtaagatcaa ... atttgtgcagGTACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTA