Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttttgctggattttttttaaaaacatttttgtcataagtattagtatatgcactaactatattcttattaaaagtatgcaatttcttccttctttctgtgtgcag

Basic information

species Glycine max
transcript GLYMA02G43550.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327904|gb|FK022127.1|FK022127
EST:     ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG                         CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: gi|9985819|gb|BE660046.1|BE660046
EST:     ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG                         CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: gi|298182544|gb|HO031279.1|HO031279
EST:     ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG                         CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: gi|21994307|gb|BQ785835.1|BQ785835
EST:     ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG                         CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: gi|20813502|gb|BQ297980.1|BQ297980
EST:     ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG                         CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: gi|7926296|gb|AW832322.1|AW832322
EST:     ATGTCAGGAACCACCCAGTTATAATTCACTGTGAGCGTGGAAAG                         CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
EST: gi|20498278|gb|BQ273208.1|BQ273208
EST:     ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAG                         CACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC
genomic: ATGTCAGGAACCACCCAGTTATAATTCACTGTAAGCGTGGAAAGgtgagatttt ... ctgtgtgcagCACCGAACGGGTTGCTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGC