Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtatttttttatatggtttatattaaatattctgattcatttgcagcctatgtactattttactattgtatagttgactctagctttgttgtcttcggtt...

Basic information

species Glycine max
transcript GLYMA02G43080.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G43080.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 5
ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtatttttttatatggtttatattaaatattctgattcatttgcagcctatgtactattttactattgtatagttgactctagctttgttgtct-tcggtt-----
||||||| || || || || || |||||||||||||| || || |||||||| || ||||||||| | ||||| ||  | |||||||| |||||||||||     | ||| |   || |||||||| |||  ||| |||  |      || |  |  ||  |     |||  ||    |   | || ||||| ||   |     
ATGTTGTATCCATTCCCAAGACAAATGAGAACTTCCGTCTCCTATATGACACAAAGGGCCGATTCAGACTCCACTCAATTAGGGATGAGGAGGCAAAGgt----ctgtattttccttctattaaat-ttcaaattgatt-actttaactgaatcaaattgattcaaaataagtgtgaatcattatgctgtctgtcacattgttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338889|gb|GR847606.1|GR847606
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|21602405|gb|BQ612736.1|BQ612736
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|6567163|gb|AW234786.1|AW234786
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|7147515|gb|AW509437.1|AW509437
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|6746785|gb|AW317241.1|AW317241
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGATTGGCCAGAGAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|193599445|gb|FK550204.1|FK550204
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|6951700|gb|AW423768.1|AW423768
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGAGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCC
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAG-GTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCC
EST: gi|4292427|gb|AI441903.1|AI441903
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCA
EST: gi|6502344|gb|AW203717.1|AW203717
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|9439986|gb|BE440497.1|BE440497
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|7926117|gb|AW832143.1|AW832143
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|213600643|gb|DB968775.1|DB968775
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|298176444|gb|HO026679.1|HO026679
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCGGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|4397449|gb|AI496446.1|AI496446
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGGTAGGTCAGTGCAGTTTGGCCAGAA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAA
EST: gi|8282832|gb|BE020393.1|BE020393
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|213601395|gb|DB968711.1|DB968711
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|12772358|gb|BG237285.1|BG237285
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|298180910|gb|HO022349.1|HO022349
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|298171801|gb|HO021393.1|HO021393
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAGGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|11687722|gb|BF595398.1|BF595398
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|10846499|gb|BF069362.1|BF069362
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGATGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCATAAATGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|12773098|gb|BG238025.1|BG238025
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|11413771|gb|BF425782.1|BF425782
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|6951685|gb|AW423753.1|AW423753
EST:     ACACTAAAAGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|27426851|gb|CA938371.1|CA938371
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|20498572|gb|BQ273502.1|BQ273502
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCA
EST: gi|24136781|gb|BU927291.1|BU927291
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|209711614|gb|BW671325.1|BW671325
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAA
EST: gi|8827735|gb|BE211465.1|BE211465
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAGAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|6719056|gb|AW306703.1|AW306703
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|209722813|gb|BW682886.1|BW682886
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|13787407|gb|BG649999.1|BG649999
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|209712826|gb|BW684181.1|BW684181
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|298190664|gb|HO032785.1|HO032785
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|14258782|gb|BG881690.1|BG881690
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|19934743|gb|BQ079773.1|BQ079773
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCG
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|8283599|gb|BE021158.1|BE021158
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAAGTTAGGTCAGTGCAGTTTGGCCAGAGAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|8284693|gb|BE022235.1|BE022235
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGNTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|4397095|gb|AI496092.1|AI496092
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAG-TTAGGTCAGTTGCAGTTTGGCCAG
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGT-GCAGTTTGGCCAG
EST: gi|213618083|gb|DB963716.1|DB963716
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|10847962|gb|BF071655.1|BF071655
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCA-TATTGGCCAGAAAGGTATCCC
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGT-TTGGCCAGAAAGGTATCCC
EST: gi|192323079|gb|FK017020.1|FK017020
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGT-AGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|213612156|gb|DB956865.1|DB956865
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|16996882|gb|BM086254.1|BM086254
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGGCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|7692719|gb|AW760819.1|AW760819
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|209714483|gb|BW684859.1|BW684859
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|4396174|gb|AI495171.1|AI495171
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|37993906|gb|CF805652.1|CF805652
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|37993916|gb|CF805662.1|CF805662
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|9440022|gb|BE440533.1|BE440533
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|213611713|gb|DB960641.1|DB960641
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|7327050|gb|AW620848.1|AW620848
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
EST: gi|19934720|gb|BQ079750.1|BQ079750
EST:     ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAG                         TTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA
genomic: ACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtattttttt ... taaatggcagTTCAAGCTCTGCAAGGTTAGGTCAGTGCAGTTTGGCCAGAAAGGTATCCCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTTGTTTCAATCCCAAAAACCAATGAGAACTTCCGCCTGCTCTATGACACTAAAGGCCGATTCCGTCTCCATTCTGTCAGGGATGATGAGGCAAAGgtatttttttatatggtttatattaaatattctgattcatttgcagcctatgtactattttactattgtatagttgactctagctttgttgtcttcggtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG