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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACACATGTTTGTCAATGCCTACAAGAATGTTCTTGCTGTTGCGGTTGAGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctttgacattttgatcaactatcaccgaaattattttcttcatccttttaatttatgagttatcttgaatgcaggacccaag

Basic information

species Glycine max
transcript GLYMA02G42260.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31464825|gb|CD406838.1|CD406838
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGGACCCAAG                  
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCT----G----AAGgtattggctt ... agg
EST: gi|31466679|gb|CD408707.1|CD408707
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGGACCCAAG                  
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCT----G----AAGgtattggctt ... agg
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|31466064|gb|CD408092.1|CD408092
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|213593433|gb|DB977120.1|DB977120
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         TAAATTTGCCGTTGCCGCCGTTGCTGCTCCTGCTGCTGCATCTGGTGCTCC
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaagTAAATTTGCCGTTGCCGCCGTTGCTGCTCCTGCTGCTGCATCTGGTGCTCC
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|58023204|gb|CX709945.1|CX709945
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|254344863|gb|GR851346.1|GR851346
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|57575168|gb|CX548143.1|CX548143
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAG                         G
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctt ... aggacccaag-
EST: gi|192334598|gb|FK025845.1|FK025845
EST:     AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGGACCCAAG                  
genomic: AGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCT----G----AAGgtattggctt ... agg

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCACACATGTTTGTCAATGCCTACAAGAATGTTCTTGCTGTTGCGGTTGAGACAGATTATTCTTTCCCGGAGGCAGACAAGGTCAAGGAGTATCTGAAGgtattggctttgacattttgatcaactatcaccgaaattattttcttcatccttttaatttatgagttatcttgaatgcaggacccaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG